Error with goodSamplesGenes()
Hi. I'm facing error with goodSamplesGenes().
This is my code:
gsg<-goodSamplesGenes(t(data))
Error msg:
Flagging genes and samples with too many missing values...
..step 1
Error in goodGenes(datExpr, weights, goodSamples, goodGenes, minFraction = minFraction, :
datExpr must contain numeric data.
I'm using Geo dataset.
Thank you so much.
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What is unclear given this error? Meaning, check that
dataonly contains numeric data. Probably there is a column with characters somewhere. Showhead(data).That's not informative unless you add a GSE number of link.
Thank you so much. I'll make sure to include all information from next time. Thank you so much.