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0 votes
1 reply
1.1K views
Tissue specific mRNA expression dataset in human and mouse
tissue-specificity
updated by Ram 4.5K • | written by Shicheng Guo 963
0 votes
3 replies
4.1K views
Mapping ortholog human and mouse transcript
biomart
written by 1769mkc 127
0 votes
3 replies
1.1K views
How do I get the gene annotations as a text file from a genbank file?
sequence-annotation genbank
updated by Ram 4.5K • | written by eae6d2e7 0
1 vote
2 replies
1.7K views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
mathematical-modelling endocrinology ml systems-biology machine-learning
written by Johannes W. Dietrich 0
0 votes
1 reply
746 views
Alignment with new reference
alignment
updated by GenoMax 16K • | written by marco.barr 22
0 votes
1 reply
936 views
Bowtie2 alignment rate
galaxy bowtie alignment-rate
updated by jeevii 0 • | written by pavithraashokkumar818 0
0 votes
1 reply
897 views
Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
scrna rnaseq
updated by Soheil 11 • | written by sithlordashley 0
1 vote
0 replies
744 views
Synthetic lethality and cancer database
interaction lethal synthetic
written by Shicheng Guo 963
0 votes
9 replies
3.6K views
Error in openning FastQC
fastqc igv
updated by GenoMax 16K • | written by huynhthienphai 0
0 votes
2 replies
1.6K views
vcf file: number of samples does not match number of columns
vcf bcftools
written by ekirsch 0
0 votes
4 replies
1.2K views
Is it reasonable to discard reads that show variation of quality across its length?
trimming
written by BRENO 0
0 votes
5 replies
1.7K views
Error running local blastn in R using system2
blastn ncbi r
written by Harrison 0
3 votes
10 replies
3.0K views
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated by Madelaine Gogol 536 • | written by Ann 241
0 votes
0 replies
675 views
News: Online course: Reproducibility in Bioinformatics
singularity version-control docker containers
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
504 views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
prokaryotic bacterial-genomics pangenomics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
892 views
Annotation of Complex genomes using NCBI Genome Workbench
genome-workbench maker
updated by Lissa Cruz Saavedra 0 • | written by SAsciences 0
0 votes
1 reply
924 views
Looking for RPIP Illumina kit probe sequences
sequences illumina
updated by GenoMax 16K • | written by David Tachiquín 0
0 votes
9 replies
2.2K views
Low number of both surviving reads after trimming
trimmomatic trimming
written by Jay 0
0 votes
2 replies
1.0K views
ONT direct RNA sequencing
drs ont
updated by Ram 4.5K • | written by Karina 0
0 votes
4 replies
1.2K views
Number of CPUs to use by DRAP for transcriptomic assmbly
drap cpu transcriptomics
written by Mohamed Abderrahmane 2
0 votes
2 replies
1.2K views
Gene reads all zero for each sample
r salmon de deseq2
written by DYLAN NICO 0
0 votes
2 replies
1.1K views
Can I have multiple active GDC download tokens?
tcga
updated by Zhenyu Zhang 130 • | written by mrk 2
1 vote
0 replies
639 views
Contradictions in GSEA results
gsea enrichment-analysis pea
updated by Ram 4.5K • | written by Tolga 3
0 votes
0 replies
607 views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation transposons phagetermini sequencing
written by alenew.am 1
0 votes
3 replies
3.7K views
FindAllMarkers not working (Error (data layers are not joined. Please run JoinLayersWarning: When testing 1 versus all)
findallmarkers seurat re-clustering
written by Nitin 0
0 votes
1 reply
719 views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scrna-seq
updated by Ram 4.5K • | written by chiditatawmbi 0
0 votes
1 reply
672 views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated by Ram 4.5K • | written by Picasa 71
0 votes
0 replies
547 views
How to change alternate conformation occupancy ?
bio.pdb.atom bio.pdb biopython
updated by Ram 4.5K • | written by udakshi 0
0 votes
2 replies
900 views
Issue with making local BLAST database
r mitochodrial diatoms blast ncbi
updated by Ram 4.5K • | written by Begonia_pavonina 22
0 votes
1 reply
1.2K views
diffbind : killed dba.count(DBsample, bParallel=FALSE)
diffbind r atacseq
written by Pierre Lindenbaum 17K
0 votes
2 replies
1.3K views
Flow Cytometry Data Analysis by Seurat
seurat
updated by Ram 4.5K • | written by gdfsnkfns 0
0 votes
12 replies
2.8K views
struggle to get fasta files from ucsc goldenPath
ucsc getfasta fasta
written by Lila M 130
0 votes
3 replies
1.4K views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio volcano-plot
written by Pumla 0
0 votes
2 replies
1.1K views
Merging featureCounts output for different species
featurecounts rna-seq
updated by DareDevil 448 • | written by Christian 0
0 votes
2 replies
1.6K views
Interproscan taking so much time
slurm interproscan transcriptomics
updated by dthorbur 350 • | written by Mohamed Abderrahmane 2
0 votes
0 replies
825 views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit fasta
written by Broccoli 0
0 votes
0 replies
468 views
Is there a good tool/reference for PBP and porin analysis
pbp porin
written by blur 30
0 votes
0 replies
498 views
meta-analysis on RNA seq AND microarray results
microarray rna
written by liuyibin2005 0
0 votes
0 replies
530 views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics spotlight logfc deconvolution
updated by Ram 4.5K • | written by M'zelle 0
0 votes
5 replies
1.2K views
calculate mismatch rate from VCF file
mismatch-rate vcf
updated by Ram 4.5K • | written by Dora 1
0 votes
6 replies
3.9K views
Hybrid assembly Pacbio- Nanopore
long-reads hybric assembly genome short-reads
written by Lissa Cruz Saavedra 0
0 votes
0 replies
490 views
In scRNA, How should I set QC standards?
scrna qc
written by mnx0723 0
0 votes
2 replies
1.1K views
Error occurs when migrate-n software performs "make mpis"
migrate-n
written by lingxue 0
0 votes
0 replies
603 views
How to check if a few pathways have relationship?
msigdb reactome kegg
written by Chris 36
0 votes
10 replies
3.0K views
Only one read per run - Trying to use CellRangerv7
fastq cellranger
updated by Ram 4.5K • | written by Sky 1
0 votes
2 replies
1.1K views
FDR and Bonferroni
fdr bonferroni
updated by noodle 65 • | written by song 0
0 votes
1 reply
956 views
Which fasta files are assembled transcripts IDBA_tran assembler ?
rna-seq assembly
updated by weidonglu 0 • | written by sunnykevin97 100
0 votes
0 replies
480 views
doing some ontology enrichment analysis
go
written by aleksk779 0
0 votes
1 reply
1.2K views
Choosing an FC Threshold
statistics rna-seq
updated by Gordon Smyth 916 • | written by Netanel 3
0 votes
1 reply
6.3K views
Converting AutoDock-Vina PDBQTs to PDB files
docking autodock vina pdbqt pdb
updated by Mensur Dlakic 3.0K • | written by Ricard 0
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