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In scRNA, How should I set QC standards?

To do QC, I drew a plot as follows. The paper I found to set the standard said that for humans, percent.mt is used as a standard of 10%. However, it is even more confusing to see that in some papers that actually analyzed it, they used 25%. I am curious about how to set the standard in this plot, and whether the standard for each sample should be set differently or the same when filtering. enter image description here

scrna qc

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