How do I get the gene annotations as a text file from a genbank file?
I have a genbank file and I need the following details about the gene annotations in a text file
# ID name start stop frame product description function cogcats status_region status_function type region_number function_number
How do I go about extracting them? Please let me know if more information is needed from me! Thank you
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Can you upload or post a link to the genbank file please?
You will have to use a programming approach. BioPython is one option: https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/genbank/
This question was also asked on bioinfo SE: https://bioinformatics.stackexchange.com/questions/22331/how-do-i-get-the-gene-annotations-as-a-text-file-from-a-genbank-file
Please keep in mind that posting the same question to multiple sites can be perceived as bad etiquette, because efforts may be made to address a problem that has already been solved elsewhere in the meantime.
The helpful thing to do if you do decide to post on multiple forums is to add a link to the other forum posts on each post so people will look at the other posts before investing their effort.