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0 votes
1 reply
675 views
Tool for gene function identification
gene-function
updated by Ram 4.5K • | written by Estevão 1
0 votes
11 replies
3.4K views
Removing adapter/primer sequence from reads while keeping flanking regions
trimming fasta cutadapt bbduk fastq
written by Bryan 2
0 votes
3 replies
1.5K views
can't download and use mageck-vispr for R?
mageck-vispr rstudio
updated by ATpoint 9.1K • | written by Vishal 0
0 votes
4 replies
1.7K views
I am unsure why my files are not being accepted in bedtools jaccard, any tips?
bedtools
written by Ronin 1
2 votes
1 reply
2.9K views
Merging multiple PLINK files
plink merging
updated by Dinmukhamed 1 • | written by Nejla 2
0 votes
6 replies
2.4K views
Seeking Help with Unexpected MA Plot Output
maplot rnaseq rstudio
updated by Istvan Albert 10K • | written by Pumla 0
0 votes
0 replies
641 views
News: Online course: Eukaryotic Metabarcoding
metabarcoding biodiversity r edna
written by Physalia-courses 281
0 votes
4 replies
1.7K views
Single cell analysis with "meta".tsv.gz file
single-cell
written by Estevão 1
1 vote
5 replies
1.6K views
merging tetraploid vcf files through bcftools
vcf bcftools
written by Bushra Bibi 8
0 votes
7 replies
2.5K views
Use of Kraken output for functional analysis
metagenomics kraken shotgun
updated by alawrence2211 0 • | written by Srinka 2
0 votes
3 replies
1.3K views
How do I find up-to-date gene symbols for outdated names
names symbols gene
written by DSmith 0
0 votes
5 replies
1.7K views
How to compare bulk RNA seq data demultiplexed in different ways?
rna-seq
updated by Ram 4.5K • | written by bioinfo 19
0 votes
2 replies
968 views
What are crucial apps/ scripts for cancer genome/data analysis that can be set up as an web based app?
web based cancer
updated by LauferVA 497 • | written by bartek 0
1 vote
2 replies
1.3K views
read length in structural variant calling
nanopore sv qc ont variant
written by eebloom 11
2 votes
4 replies
1.4K views
Removing batch effect using combat-seq
combat-seq batch-effect rna-seq
updated by Ram 4.5K • | written by Netanel 3
0 votes
2 replies
956 views
HWE filter of vcf files
snp vcf.
written by Max 0
0 votes
0 replies
473 views
Long-read data for Alpha-Thalassemia
thalassemia nanopore lonngread
written by adarsh 8
0 votes
8 replies
2.5K views
Selection criteria for nanobody
nanobody
updated by Fran 0 • | written by farahnazir2 0
0 votes
1 reply
1.6K views
Drug drug interaction
drug-drug interaction
updated by tao001126 0 • | written by shivangi.agarwal800 12
0 votes
0 replies
699 views
Conditional analysis, direction of effect is changed after conditioning
gwas conditioning population analysis genetics
written by AMARU 0
0 votes
1 reply
1.3K views
Cell type classification using an integrated reference
scrnaseq
updated by bk11 312 • | written by kayah 2
0 votes
2 replies
1.2K views
Adding Clinvar data source to funcotator
gatk clinvar funcotator gnomad
updated by Pierre Lindenbaum 17K • | written by Mojtaba 0
0 votes
0 replies
636 views
rMATS reports zero evenets?
splicing rna-seq rmats
written by PK 13
0 votes
3 replies
978 views
how to do the repeatability filtering of vcf files?
snp vcf.
updated by Pierre Lindenbaum 17K • | written by Max 0
0 votes
5 replies
1.7K views
Homer giving troubles
homer homer
updated by Bryan 0 • | written by naveedhasan2000 1
0 votes
0 replies
721 views
How to annotate a bed file using gtf using python
gtf bed
updated by Ram 4.5K • | written by naveedhasan2000 1
0 votes
2 replies
1.5K views
trying to do some GSEA in python
python gsea go
updated by Wayne 208 • | written by aleksk779 0
0 votes
0 replies
842 views
Issues while trying to create my own PON (Panel Of Normals) with GATK
vcf gatk somatic genomics variants
written by Samuel 2
0 votes
2 replies
2.4K views
ENCODE Hi-C FASTQ files are SINGLE end
fastq layout encode hi-c
updated by Yihang 0 • | written by hamarillo 8
0 votes
1 reply
940 views
Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Biological Insight
rnaseq deseq2 dispersionplot
updated by ATpoint 9.1K • | written by Pumla 0
0 votes
3 replies
1.4K views
cell type adjustment - how many cell types to include?
celltypes ewas
updated by LChart 518 • | written by kaybelter 0
0 votes
0 replies
947 views
OrthoVenn3 Singletons
venn singletons orthovenn orthofinder
updated by GenoMax 16K • | written by Lasya 0
0 votes
1 reply
812 views
AUC=1, is it possible after lasso regression?
lasso auc
updated by Jeremy Leipzig 2.3K • | written by Amir 0
0 votes
0 replies
804 views
Dante Labs VCF analysis, CHROM column absence UPD: solved!
vcf coordinate dante assembly chromosome
written by k.alincha 0
0 votes
5 replies
1.8K views
How to assure that sequence consensus is genuine?
genome
written by marongiu.luigi 79
0 votes
4 replies
1.6K views
How evaluate assembly when multiple reference strains are available?
genome quast reference assembly
updated by dthorbur 350 • | written by MetaPaul 0
0 votes
1 reply
864 views
Need help with improving the 16S rRNA sequence quality with trimmomatic?
bioinformatic trimmomatic
updated by jeevii 0 • | written by Kai Xin 0
1 vote
1 reply
766 views
Forgot the web site with comparison of NGS platforms
ngs platforms
updated by cmdcolin 448 • | written by konstantinkul 13
0 votes
1 reply
965 views
How to keep only first part of the name when adding AddOrReplaceReadGroups in multiple BAM files at a time?
slurm bash gatk picard
written by kabir.deb 9
0 votes
7 replies
2.0K views
Help with summarizeOverlaps function in RNASeq analysis using R
r rna-seq summarizeoverlaps genomicalignments
updated by BioinfGuru 214 • | written by FJCF 0
0 votes
1 reply
1.6K views
Data table for LOEUF loss-of-function observed/expected upper bound fraction
loeuf
updated by Pierre Lindenbaum 17K • | written by Shicheng Guo 963
0 votes
2 replies
1.3K views
Why are gene models from JGI non-sense when using AGAT to to extract proteins?
translation models gif gene cgi
written by O.rka 75
0 votes
0 replies
940 views
details about PCA in plink 2.0: eigenvectors, PCs, scores
gwas plink pca
written by kaybelter 0
0 votes
2 replies
997 views
Database for non cancer cell lines
cell-line l1000 rna-seq cancer-database lincs
written by ANSARAHMAD 0
0 votes
2 replies
1.2K views
Convert to ENTREZGENE
maize entrez
written by san96 19
0 votes
1 reply
1.4K views
How to calculate depth of coverage and applying read depth filter
depth-of-coverage cram wgs
updated by Ram 4.5K • | written by Sd 0
0 votes
3 replies
1.9K views
BioGRID REST - How to retrieve all the protein interactions?
biogrid python rest
updated by Pierre Lindenbaum 17K • | written by dbykov 0
0 votes
4 replies
1.6K views
Problem generating paired end reads when converting Cell Ranger's BAM result to FASTQ
fastq bam
written by ntuzov 0
0 votes
1 reply
844 views
Finding chimeric reads for CRISPR edited mouse cells from RNA-Seq data
rna-seq crispr
updated by Haci 74 • | written by Ethan 0
1 vote
7 replies
2.2K views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
jbrowse jbrowse2
updated by cmdcolin 448 • | written by I0110 16
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