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0 votes
1 reply
704 views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scrna-seq
updated by Ram Ram • written by chiditatawmbi • chiditatawmbi
0 votes
1 reply
664 views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated by Ram Ram • written by Picasa Picasa
0 votes
0 replies
543 views
How to change alternate conformation occupancy ?
bio.pdb.atom bio.pdb biopython
updated by Ram Ram • written by udakshi • udakshi
0 votes
2 replies
895 views
Issue with making local BLAST database
r mitochodrial diatoms blast ncbi
updated by Ram Ram • written by Begonia_pavonina • Begonia_pavonina
0 votes
1 reply
1.2K views
diffbind : killed dba.count(DBsample, bParallel=FALSE)
diffbind r atacseq
written by Pierre Lindenbaum Pierre Lindenbaum
0 votes
2 replies
1.3K views
Flow Cytometry Data Analysis by Seurat
seurat
updated by Ram Ram • written by gdfsnkfns • gdfsnkfns
0 votes
12 replies
2.8K views
struggle to get fasta files from ucsc goldenPath
ucsc getfasta fasta
written by Lila M Lila M
0 votes
3 replies
1.4K views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio volcano-plot
written by Pumla • Pumla
0 votes
2 replies
1.1K views
Merging featureCounts output for different species
featurecounts rna-seq
updated by DareDevil DareDevil • written by Christian • Christian
0 votes
2 replies
1.6K views
Interproscan taking so much time
slurm interproscan transcriptomics
updated by dthorbur dthorbur • written by Mohamed Abderrahmane • Mohamed Abderrahmane
0 votes
0 replies
814 views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit fasta
written by Broccoli • Broccoli
0 votes
0 replies
462 views
Is there a good tool/reference for PBP and porin analysis
pbp porin
written by blur blur
0 votes
0 replies
493 views
meta-analysis on RNA seq AND microarray results
microarray rna
written by liuyibin2005 • liuyibin2005
0 votes
0 replies
524 views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics spotlight logfc deconvolution
updated by Ram Ram • written by M'zelle • M'zelle
0 votes
5 replies
1.2K views
calculate mismatch rate from VCF file
mismatch-rate vcf
updated by Ram Ram • written by Dora • Dora
0 votes
6 replies
3.9K views
Hybrid assembly Pacbio- Nanopore
long-reads hybric assembly genome short-reads
written by Lissa Cruz Saavedra • Lissa Cruz Saavedra
0 votes
0 replies
484 views
In scRNA, How should I set QC standards?
scrna qc
written by mnx0723 • mnx0723
0 votes
2 replies
1.1K views
Error occurs when migrate-n software performs "make mpis"
migrate-n
written by lingxue • lingxue
0 votes
0 replies
591 views
How to check if a few pathways have relationship?
msigdb reactome kegg
written by Chris • Chris
0 votes
10 replies
2.9K views
Only one read per run - Trying to use CellRangerv7
fastq cellranger
updated by Ram Ram • written by Sky • Sky
0 votes
2 replies
1.1K views
FDR and Bonferroni
fdr bonferroni
updated by noodle noodle • written by song • song
0 votes
1 reply
954 views
Which fasta files are assembled transcripts IDBA_tran assembler ?
rna-seq assembly
updated by weidonglu • weidonglu • written by sunnykevin97 sunnykevin97
0 votes
0 replies
482 views
doing some ontology enrichment analysis
go
written by aleksk779 • aleksk779
0 votes
1 reply
1.2K views
Choosing an FC Threshold
statistics rna-seq
updated by Gordon Smyth Gordon Smyth • written by Netanel • Netanel
0 votes
1 reply
6.2K views
Converting AutoDock-Vina PDBQTs to PDB files
docking autodock vina pdbqt pdb
updated by Mensur Dlakic Mensur Dlakic • written by Ricard • Ricard
0 votes
2 replies
684 views
novel and know mir156 and mir172
a
updated by gayachit gayachit • written by Fadmo • Fadmo
0 votes
2 replies
1.4K views
Update R in Posit Workbench
r posit
written by Nitin • Nitin
0 votes
6 replies
2.9K views
Pangenome of plant
pangenome plant
written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.2K views
vg call is time consuming
vg
written by Maxine • Maxine
2 votes
14 replies
10K views
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
tax4fun2
updated by Ram Ram • written by Elsa • Elsa
0 votes
8 replies
2.9K views
STAR aligner options
star
written by theophile • theophile
1 vote
3 replies
1.3K views
Website or tool to obtain a list of genes that participate in a specific process?
genomics
updated by NancyTLi • NancyTLi • written by Hamtaro • Hamtaro
0 votes
2 replies
1.5K views
How to obtain Node/ Edge information from a Reactome Pathway
r api pathways reactome databases
updated by GenoMax GenoMax • written by K.patel5 • K.patel5
1 vote
3 replies
1.6K views
Why counting by diffbind and featurecounts differ?
featurecounts diffbind
updated by Ian Ian • written by Ankit Ankit
0 votes
1 reply
730 views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
atac-seq
updated by Yogi • Yogi • written by Ronin • Ronin
0 votes
0 replies
396 views
Association Module to traits
module-trait-relationships wgcna genie3 domino
updated by Ram Ram • written by r.shiasi3897 • r.shiasi3897
0 votes
0 replies
585 views
Number of pathway result from GSVA
gsva
written by Chris • Chris
0 votes
1 reply
782 views
How can I remove duplicate SNP?
plink
updated by iraun iraun • written by Zhennan • Zhennan
0 votes
1 reply
614 views
SNP VCF files from hybrid populations and parental populations generated by GBS in public databases
contaminations verification parental check
updated by Ram Ram • written by Hajar • Hajar
0 votes
0 replies
504 views
Creating a custom ontology for peptides
ontology peptide
written by Mathew • Mathew
0 votes
3 replies
1.7K views
convert cds to seurat object
r monocle3 seurat
updated by edoardofilippi1998 • edoardofilippi1998 • written by sooni • sooni
0 votes
0 replies
471 views
GSEA number dimension of expression dataset
gsea
written by edoardofilippi1998 • edoardofilippi1998
0 votes
3 replies
1.3K views
Limma compare between 3 conditions vs 2 conditions
limma
updated by Gordon Smyth Gordon Smyth • written by Chris • Chris
0 votes
0 replies
559 views
single cell data integration approach
comparison integration pairwise singlecell
written by Jay • Jay
0 votes
3 replies
1.1K views
High number of detected genes per cell after doublet removal - scRNAseq data
scrnaseq duoblet
written by sarahmanderni sarahmanderni
0 votes
3 replies
2.8K views
DESeq2 and normalization
rna-seq normalization deseq2
updated by dsull dsull • written by JH • JH
0 votes
2 replies
1.0K views
Error with goodSamplesGenes()
r wgcna
written by bioinfo_enthusiast • bioinfo_enthusiast
0 votes
0 replies
523 views
Variant Enrichment Analysis
analysis enrichment vep variant
written by Mojtaba • Mojtaba
0 votes
7 replies
2.1K views
Salmon Quantification in Alignment based-mode
salmon rna-seq tpm
updated by GenoMax GenoMax • written by Patadu94 • Patadu94
0 votes
1 reply
679 views
dbsnp flanks information
dbsnp
updated by Pierre Lindenbaum Pierre Lindenbaum • written by sskimvd • sskimvd
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