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0 votes
1 reply
841 views
Input file of Haploview
haploview tagsnp
updated by LauferVA 497 • | written by Đạt 0
0 votes
6 replies
1.9K views
Error in running Mauve alignner in Ubuntu 20.04
java linux aligner mauve
written by marongiu.luigi 79
0 votes
2 replies
813 views
RNA-Seq isoforms identification
rna-seq
updated by Andres 2 • | written by latita.atun 0
0 votes
2 replies
1.1K views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt rnaseq
updated by dsull 781 • | written by ev97 4
0 votes
0 replies
952 views
ChIPseeker annotation on gene or transcript level
chipseeker annotation chip-seq
written by zea 1
1 vote
0 replies
1.0K views
Herald: The Biostar Herald for Wednesday, April 03, 2024
herald
written by Biostar 380
0 votes
0 replies
503 views
Integration of scRNA, a conceptual doubt
seurat scrna integration
written by edoardofilippi1998 0
0 votes
0 replies
742 views
Diffbind and DESeq2 comparison for differential sites
diffbind deseq2
updated by Ram 4.5K • | written by Ankit 52
0 votes
0 replies
545 views
News: Online course: Food Traceability Using Genomic Tools
nanopore genomic-tools illumina food-traceability
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
1.8K views
What does the part "mature miRBase miRNAs not detected by miRDeep2" actually mean in a miRDeep2 analysis? Should those hits be included in results?
mirdeep2 mirna
updated by binaryCode 1 • | written by Debasish 0
1 vote
3 replies
1.7K views
How to run BRIG on Ubuntu 22?
brig ubuntu
updated by Reno 0 • | written by marongiu.luigi 79
0 votes
2 replies
972 views
utr sequence retrieval from UCSC
utr sequencing ucsc genome
updated by GenoMax 16K • | written by kim 7
0 votes
0 replies
450 views
NicheNet cell-cell communication analysis outcome
nichenet scrna-seq
written by QX 9
0 votes
9 replies
3.7K views
Can index hopping lead to more reads in samples?
index-hopping novoseq illumina ngs seqeucning
written by Assa Yeroslaviz 197
0 votes
0 replies
706 views
When to merge ChIP-Seq data?
homer chip-seq macs3
updated by Ram 4.5K • | written by Thomas 0
0 votes
2 replies
1.4K views
minimac3 download - Connection timed out
gwas minimac3 imputation
written by SeoG 1
8 votes
8 replies
17K views
MAF vs VAF
sequencing
updated by AshleeThomson 13 • | written by lauren.wahyudi 8
0 votes
1 reply
1.1K views
mirbase gff and mature fastas for custom STAR index genome?
mirbase indexing star genome
written by RNAseqer 30
0 votes
1 reply
1.5K views
naming the UMAP cluster
seurat scanpy umap
updated by Hamid Ghaedi 333 • | written by orzrzlyo 2
0 votes
0 replies
498 views
WGCNA modulePreservation on three expression sets
wgcna
written by CTLong 14
0 votes
3 replies
1.6K views
Multiple iterations of sorted bam output files with picard SortSam
picard
updated by GenoMax 16K • | written by shpak.max 8
1 vote
2 replies
2.1K views
Issues Using DMRcate and rmSNPandCH
dmrcate r
updated by t.peters 2 • | written by Indira 1
0 votes
4 replies
2.8K views
Bowtie2 mapping is slow
metagenomics bowtie2 mapping read
updated by colindaven 844 • | written by Md Moinuddin 0
0 votes
1 reply
912 views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
written by Gordon 0
0 votes
1 reply
1.1K views
How can we remove a sub-pathway from a parent pathway in Reactome Database?
pathway reactome
updated by NancyTLi 2 • | written by Muiz Khan 0
0 votes
0 replies
545 views
How to extract BED-format annotation tracks for the newly inserted segments
bed mauve
updated by Ram 4.5K • | written by FZ 0
0 votes
0 replies
602 views
Variant Calling for one gene - Stage of filtering
gatk picard variant-calling
updated by Ram 4.5K • | written by andrebolerbarros 0
0 votes
2 replies
1.0K views
Is refSeq table DNA or RNA coordinate?
refseq ucsc ncbi
updated by GenoMax 16K • | written by Alewa 19
0 votes
3 replies
1.3K views
HISAT2 alignment issue
rnaseq alignment hisat2
updated by Ram 4.5K • | written by eleven11 0
0 votes
0 replies
537 views
How to improve batch correction
ruvg batch-correction rna-seq
updated by Ram 4.5K • | written by Shaimaa Gamal 1
0 votes
0 replies
441 views
WGCNA: analysis of complex trait associations with regression
wgcna
written by w.cookson 0
0 votes
7 replies
2.5K views
How to build ribosomal interval files to use in CollectRnaSeqMetrics for hg38.p14
hg38.p14 ribosomal-intervals
updated by noodle 65 • | written by n@4j 0
0 votes
7 replies
6.5K views
Installing Cell Ranger
cellranger
written by gdfsnkfns 0
0 votes
7 replies
11K views
fastq-dump: command not found, what is wrong?
assembly sratoolkit genomics
updated by ATpoint 9.1K • | written by BioinfoNoob6 0
1 vote
7 replies
2.7K views
UK biobank versus Genomics England
wgs dragen genomicsengland uk-brap vcf
updated by Orgie 0 • | written by zizigolu 438
0 votes
9 replies
2.1K views
variant calling
variant-calling
updated by Ram 4.5K • | written by dalibenam64 0
2 votes
3 replies
1.6K views
TMM normalization with DESeq2
rna-seq deseq2
updated by Ram 4.5K • | written by marco.barr 22
0 votes
0 replies
683 views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
written by Assa Yeroslaviz 197
0 votes
1 reply
761 views
How to use the Rfoot output to eliminated nonribosomal sequence reads
profiling ribosome ribo-seq rfoot
written by nonaddldy 1
0 votes
1 reply
1.2K views
Batch effect issue in RNA velocity analysis
rna-velocity integration
updated by ATpoint 9.1K • | written by sarahmanderni 13
0 votes
2 replies
1.4K views
Processing and calling SVs from PacBio data
pacbio long-read variant-calling
updated by Ram 4.5K • | written by adarsh 8
0 votes
4 replies
1.7K views
Compute bootstrap values on consensus tree
phylogeny tree raxml
written by pablo 35
0 votes
1 reply
747 views
multiple reference sequences
freebayes
updated by GenoMax 16K • | written by emilydolivo97 1
0 votes
1 reply
1.8K views
Can't download txdbmaker package
aspli package txdbmaker r
updated by ATpoint 9.1K • | written by Grace 0
0 votes
3 replies
1.2K views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics rna-seq p-value
updated by Ram 4.5K • | written by Netanel 3
0 votes
2 replies
1.3K views
Using nextflow for performing quality control and trimming of reads
quality fastqc nextflow trimmomatic
updated by dthorbur 350 • | written by nithya 0
0 votes
3 replies
1.3K views
Unable to downlaod files from GEO
geo
updated by Basti 210 • | written by Aaliya 0
0 votes
1 reply
1.1K views
Getting consensus/assembly from RAD-seq data locus, non-model organism
rad-seq
updated by Philipp Bayer 888 • | written by Andres 2
0 votes
1 reply
949 views
WGCNA is not generationg TOMfiles
wgcna
updated by LChart 518 • | written by Nicolas 0
0 votes
3 replies
1.3K views
CCA with random effects model
cca
updated by dariober 1.5K • | written by leranwangcs 15
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