Is refSeq table DNA or RNA coordinate? · Biostar

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Is refSeq table DNA or RNA coordinate?

is the table for ncbiRefSeqCurated on genome.ucsc.edu DNA or RNA coordinates? I'm looking genomic coordinates of protein coding genes in human genome. I'm not sure if i'm using the right table?

refseq ucsc ncbi

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updated 2.4 years ago by GenoMax

• written 2.4 years ago by Alewa

Did you look at the data format description page for the table?

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written 2.4 years ago by Ram

1 answer

hg19: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=1370583283_X7e611rYtsR6t4akTTop2MbqJswP&hgta_doSchemaDb=hg19&hgta_doSchemaTable=ncbiRefSeqCurated

hg38: https://genome.ucsc.edu/cgi-bin/hgTables?db=hg38&hgta_group=genes&hgta_track=refSeqComposite&hgta_table=ncbiRefSeqCurated&hgta_doSchema=describe+table+schema

Positions are based on chromosome coordinates and are for exons. See example gene in genome viewer --> https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr1%3A12010%2D13670&hgsid=2077707250_pLimH7ju117hXF3QQ5OAuPiOlARu

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written 2.4 years ago by GenoMax

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