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Export Fasta File With Multiple Non-Coding Rna Sequences

I have recently been using UCSC's Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) where I can copy a list of genes and it returns one single FASTA file with the desired sequences (5' UTR - CDS - 3'UTR, etc).

Is there any database where I can import a list of non-coding genes 

e.g.
n275778
n343753
n343226
n296681
n343185

and get the fasta file in the format

>n275778
atgtttgatagagagac
>n343753
atgtttgatagagagac
>n343226
atgtttgatagagagac
>n296681
atgtttgatagagagac
>n343185
atgtttgatagagagac

or something equivalent ?

database fasta rna
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updated by Istvan Albert Istvan Albert • written by hicsuntdrac0nis • hicsuntdrac0nis

1 answer

bedtools has a command called getasta that will extract sequences specified in a BED file from a reference FASTA file.

• 0 views • link
written by Istvan Albert Istvan Albert

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