Export Fasta File With Multiple Non-Coding Rna Sequences

Question

[hicsuntdrac0nis]

I have recently been using UCSC's Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) where I can copy a list of genes and it returns one single FASTA file with the desired sequences (5' UTR - CDS - 3'UTR, etc).

Is there any database where I can import a list of non-coding genes

e.g.
n275778
n343753
n343226
n296681
n343185

and get the fasta file in the format

>n275778
atgtttgatagagagac
>n343753
atgtttgatagagagac
>n343226
atgtttgatagagagac
>n296681
atgtttgatagagagac
>n343185
atgtttgatagagagac

or something equivalent ?

Answer 1

[Istvan Albert]

bedtools has a command called getasta that will extract sequences specified in a BED file from a reference FASTA file.