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How to access an image (slice) of interest in spatial analysis

Hello

I am doing an analysis via fgsea package and when I want to visualize the results, although I have three images (slices) stored in seurat object, I cannot access other slices and the result is just based on the first slice. I am wondering how can I make the slice of interest as default?

summary(data@images)
         Length Class    Mode
slice1   1      VisiumV1 S4  
slice1.1 1      VisiumV1 S4  
slice1.2 1      VisiumV1 S4
spatial-transcriptomics seurat visium

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