yes, thanks a lot
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Dimitris Polychronopoulos •
Converting UCSCData Class to GRanges Class
Dear all,
I have a UCSCData class object and would like to transform it into a Granges object. Is there any easy way of doing that (apart from doing that manually using the GRanges function)?
More specifically, I have a list of ±50K promoter elements from UCSC:
summary(prom)
Length Class Mode
50066 UCSCData S4
Many thanks,
Dimitris
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Ram
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Dimitris Polychronopoulos •
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Dimitris Polychronopoulos •
1 answer
From a little playing with a UCSCData object I got via rtracklayer, it sure seems that just calling
GRanges(prom)
should give you a set of the GRanges for every promoter. Did that not work for you?
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Joseph Pearson
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