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0 votes
2 replies
1.0K views
BWA MEM Alignment mapped small part of the reads!!
bwa mem
updated by bioruffo 6 • | written by Bunit 0
1 vote
0 replies
675 views
Job: Job Opening - Fred Hutch - Director of Training & Community
fred-hutchinson
updated by Ram 4.5K • | written by Fred Hutch (Recruiting) 3
1 vote
0 replies
760 views
Correlation analysis in single-cell sequencing data
scrna-seq correlation scatac-seq
written by Yingying 6
0 votes
0 replies
655 views
MIENTURNET - miRNA enrichment analysis
mirna-enrichment mrna rna
updated by Ram 4.5K • | written by PBC 1
0 votes
5 replies
1.8K views
Parsing fasta file by coordinates
linux fasta
updated by GenoMax 16K • | written by sorrymouse 12
0 votes
2 replies
1.6K views
comparing VCF files
long-reads vcf variants ont nanopore
written by eebloom 11
0 votes
2 replies
1.2K views
Using velocyto on 3'UTR 10x single-cell RNA-Seq data
single-cell single-end 10x velocyto
written by Sergio 0
0 votes
0 replies
783 views
Job: Post-doctoral positions in computational biomedicine
data-science biomedicine machine-learning
updated by Ram 4.5K • | written by pandey.gaurav 20
0 votes
13 replies
3.8K views
Allocating right resources to HPC using LSF scheduler
bwa gatk hpc lsf bsub
written by Maverick 1
8 votes
6 replies
7.3K views
Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated by Ram 4.5K • | written by Kevin Blighe 9.0K
0 votes
5 replies
1.7K views
How to download RNAseq data of only male KIRC patients?
tcgabiolinks
written by bioinfo_enthusiast 0
0 votes
0 replies
649 views
Multifactor Analysis in DiffBind
diffbind chipseq chip-seq
written by erbrocato 0
0 votes
0 replies
577 views
How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated by Ram 4.5K • | written by PK 13
0 votes
2 replies
1.0K views
Deseq generating warning "the model matrix is not full rank"
deseq
updated by bioruffo 6 • | written by MAPK2 5
1 vote
2 replies
11K views
Genome annotation: convert gtf to gff3 file
gff3 gtf
updated by vague-barracuda-4686 0 • | written by shinyjj 7
0 votes
3 replies
1.3K views
What tools to assess coverage, completeness and contamination?
completeness contamination covarage
updated by Mensur Dlakic 3.0K • | written by Kárita 0
0 votes
0 replies
398 views
Metacoder plot_cladogram long calculation times
metacoder
updated by Ram 4.5K • | written by La52dA97b6 0
3 votes
9 replies
7.1K views
Snakemake >= version 8 cluster configuration and SLURM job submission
parallelization slurm snakemake cluster
updated by Simon 2 • | written by Maxwell 7
0 votes
1 reply
926 views
RNA-seq with normalized cpm count
rna-seq deseq2 edger
updated by Ram 4.5K • | written by GiV17 5
0 votes
4 replies
1.3K views
Confirm if a genome position falls into a coding exon
exon ucsc coding
updated by Pierre Lindenbaum 17K • | written by Lila M 130
1 vote
0 replies
485 views
Downloading immne signature and pathway signature genes form publication and KEGG
genes transcriptome_signature
written by mrazib0210 1
0 votes
1 reply
911 views
How to perform GO enrichment analysis for assembled sequence ?
go-enrichment gene-ontology
updated by Ram 4.5K • | written by Sony Nguyen 2
3 votes
0 replies
1.0K views
Herald: The Biostar Herald for Monday, March 25, 2024
herald
written by Biostar 380
0 votes
4 replies
2.8K views
bowtie2 maximum value of MAPQ
bowtie2 bowtie
updated by axol0tl 0 • | written by sami 4
0 votes
8 replies
2.0K views
0-based coordinates from samtools depth
samtools coverage depth
updated by Pierre Lindenbaum 17K • | written by marco.barr 22
1 vote
0 replies
535 views
checkm lineage.ms output file
checkm lineage
written by A_heath 18
11 votes
14 replies
14K views
Finding Rrna Genes In Metagenomic Data
rna rrna metagenomics
updated by Ram 4.5K • | written by toshnam 65
1 vote
12 replies
2.6K views
Variant calling of GBS data
gbs variants bqsr
written by Bushra Bibi 8
0 votes
11 replies
2.6K views
RNA seq aligner?
alignment
written by tesfaye 0
0 votes
6 replies
1.9K views
Coverage depth map of genome from multiple sample coverage bedgraphs?
bedops bedmap coverage
written by Agastya 1
0 votes
2 replies
1.3K views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated by Michael Dondrup 5.6K • | written by avpuzanov 0
0 votes
0 replies
514 views
OSCC Dataset downlod using TCGA biolink
r ossc tcgabiolink gdc
updated by Ram 4.5K • | written by Biogeek 0
3 votes
1 reply
1.8K views
Tool: TGSFilter, An ultra-fast and efficient tool for long reads filtering and trimming
genome-assembly filtering reads trimming
updated by Yingzi 0 • | written by Huiyang 20
0 votes
3 replies
1.2K views
two channel detection in SNP-chip
dna snpchip 2-channel
updated by LChart 518 • | written by Barma 0
0 votes
3 replies
1.2K views
Reference mouse phased vcf
mm10 vcf phasing beagle
written by machoo 0
0 votes
0 replies
603 views
Public datasets for genome-wide level mRNA-protein correlation calculation?
correlation protein mrna
written by Shicheng Guo 963
0 votes
0 replies
497 views
What is the usual basecalls length and reference mapping length relationship?
genome alignment rna-seq
updated by Carlo Yague 906 • | written by anne 0
0 votes
1 reply
892 views
Difference in relative abundance between MicrobiomeDB and r phyloseq
phyloseq
updated by Chris Dean 42 • | written by benkosta 0
0 votes
5 replies
2.2K views
How to filter Illumina Nirvana variant annotation?
nirvana filtration
updated by Pierre Lindenbaum 17K • | written by Kauno tvirtovės 0
0 votes
0 replies
876 views
News: Online course: Introduction to GWAS
gwas imputation statisticalpower
written by Physalia-courses 281
0 votes
0 replies
633 views
beta coefficient improves after doing mediation analysis
coefficient mediation beta regression
written by rheab1230 15
0 votes
3 replies
1.8K views
Can shotgun metagenome approaches effectively target both RNA and DNA viruses in low-viral-load water samples?
rna-virus binning metagenome abundance shotgun
updated by noodle 65 • | written by mathavanbioinfo 8
0 votes
1 reply
2.3K views
Help with SCENIC+
scenic-plus
updated by corbettberry 1 • | written by Chris 36
0 votes
2 replies
1.7K views
What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it?
gatk vcf merge
updated by Pierre Lindenbaum 17K • | written by 8armed 2
0 votes
2 replies
1.3K views
How to extract unmapped reads to assemble a plasmid
plasmid transconjugant reference-genome
written by Barbara 0
0 votes
16 replies
3.5K views
What is the sequence origin in human plasma?
human sequence cfdna
written by biwdpang 0
0 votes
0 replies
1.0K views
Cromwell slurm singularity call caching
cromwell singularity wdl
written by asmariyaz23 1
0 votes
1 reply
681 views
Getting error in alignment using STAR
star
updated by Ram 4.5K • | written by pavithra.bioinformatics 0
0 votes
1 reply
2.5K views
Speed up PHASE software for haplotype inference
multithreading unix haplotype
updated by WANG 0 • | written by kshitijtayal 4
1 vote
1 reply
845 views
GIS overlay for environmental samples from NCBI
ncbi environmental sra gis arcpro
written by noodle 65
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