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0 votes
0 replies
741 views
DADA2 truncLen value
metabarcoding phyloseq dada2 illumina
written by Bioinfo • Bioinfo
0 votes
3 replies
1.1K views
Resources regarding Proteomics (In-Silico)
molecular-simulation docking protein proteomics
updated by Ram Ram • written by Saurabh • Saurabh
0 votes
5 replies
2.4K views
Deeptools scale issue for plotHeatmap
deeptools computematrix plotheatmap
written by Learner • Learner
1 vote
1 reply
1.9K views
why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
written by mathavanbioinfo mathavanbioinfo
0 votes
5 replies
1.8K views
Haddock 2.4
protein docking
updated by dthorbur dthorbur • written by Preeti • Preeti
0 votes
2 replies
3.5K views
Beagle Phasing and Imputation
imputation phasing beagle
written by Duarte Molha Duarte Molha
1 vote
0 replies
596 views
ENVO Ontology to Annotate Plain Text
natural language nl ontology envo
written by marie.harmel • marie.harmel
0 votes
4 replies
7.8K views
Subsetting Seurat object based on list of cell barcodes
seurat
updated by Ming Tommy Tang Ming Tommy Tang • written by bgbs • bgbs
28 votes
16 replies
25K views
Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen gdc r tcga
updated by aUser • aUser • written by martinguerrerog89 martinguerrerog89
0 votes
1 reply
787 views
Issues With Cram -> Fastq from GTEx v8 WGS
fastq gtex cram
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Vullnet • Vullnet
0 votes
2 replies
1.1K views
DEG (Differential expression gene) analysis
deg r
updated by dsull dsull • written by sooni • sooni
0 votes
2 replies
1.1K views
Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
rna-seq biobambam picard
written by kcarey • kcarey
0 votes
0 replies
629 views
News: Online course: Adaptation Genomics
structuralvariants selection adaptationgenomics populationstructure
written by Physalia-courses Physalia-courses
0 votes
0 replies
497 views
News: Online course: Analysis of Prokaryotic Pangenomes
bacterialgenomics pangenomics
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.2K views
Is it better to pool samples prior to running deseq2, or should the algorithm be run separately for every pool?
deseq2 rna-seq
written by Shelby • Shelby
0 votes
8 replies
1.9K views
Expert Guidance Required for De Novo Transcriptome Analysis
transcriptome de-novo
updated by GenoMax GenoMax • written by ben@f • ben@f
0 votes
1 reply
1.3K views
Downloading epigenetic and mutation data of specific TCGA BRCA samples
mutation rna-seq tcga
updated by aUser • aUser • written by Soura • Soura
0 votes
5 replies
2.0K views
Differential express genes in imbalance groups
limma
written by Chris • Chris
0 votes
1 reply
872 views
basal gene expression level
rna-seq
updated by LChart LChart • written by Francois Piumi • Francois Piumi
0 votes
0 replies
660 views
Evaluating MAST model fit using AIC
cell single mast scrna transcriptomics
written by mhale • mhale
0 votes
1 reply
1.0K views
Seurat 5 integration
integration seurat
updated by jared.andrews07 jared.andrews07 • written by sarahmanderni sarahmanderni
0 votes
5 replies
1.9K views
scRNAseq normalization
scrna-seq sct
updated by ATpoint ATpoint • written by sarahmanderni sarahmanderni
0 votes
7 replies
3.0K views
Transcription Start Site
tss
updated by Ming Tommy Tang Ming Tommy Tang • written by Fatemeh Nabizadeh • Fatemeh Nabizadeh
0 votes
0 replies
617 views
Limma contrasts - difference between single and multiple concurrent contrasts results
r limma
updated by Ram Ram • written by shasabhi1 • shasabhi1
0 votes
0 replies
515 views
Genotype simulation
gwas simulation sim1000
updated by Ram Ram • written by Eliza • Eliza
1 vote
2 replies
1.1K views
Problem with .bed file
cygwin64 bed plink
updated by Ram Ram • written by Dinmukhamed • Dinmukhamed
0 votes
1 reply
1.9K views
compareCluster's enrichGO difference in results when stating ont = "ALL" vs NULL
enrichgo clusterprofiler
updated by Dunois • Dunois • written by TIANTHING JESTLIN • TIANTHING JESTLIN
0 votes
0 replies
679 views
Remove SNPs based on MAF in Fst analysis
snp maf fst popgenome
written by kopelol • kopelol
2 votes
2 replies
1.2K views
Before or after LD clumping for PRS calculation in GWAS
gwas
written by K Lee • K Lee
0 votes
2 replies
1.9K views
Trim Galore: Automatic detection of adapters
trimgalore
written by Daniel • Daniel
1 vote
3 replies
1.8K views
Troubleshooting a REGENIE sex-stratified GWAS
gwas regenie
updated by Corentin Corentin • written by s.may-wilson • s.may-wilson
0 votes
4 replies
1.3K views
Average expression of a sample in single-cell data
single-cell rna-seq
written by newuser2024 • newuser2024
0 votes
6 replies
2.1K views
blastn: 2.2.31+ Package: blast 2.2.31, build Jun 2 2015 10:47:46
blastn blast ubuntu
updated by SequenceServer • SequenceServer • written by Luca • Luca
0 votes
1 reply
617 views
turning old shell ncbi querys into url querys
eutils ncbi
updated by GenoMax GenoMax • written by Guelakais • Guelakais
0 votes
1 reply
1.6K views
ArchR Doublet Inference to Signac
signac scatac-seq archr
updated by fracarb8 fracarb8 • written by bioinformatics.girl • bioinformatics.girl
0 votes
10 replies
2.8K views
t-test in two groups, multiple rows
r t-test
written by sooni • sooni
0 votes
4 replies
3.7K views
sam.gz files to bam using samtools
rna-seq samtools
updated by robertoalbanese.bioinfo • robertoalbanese.bioinfo • written by tikshyadav19 • tikshyadav19
0 votes
4 replies
1.2K views
error in wigToBigWig while converting mappability to bedgraph
mappability gem bedgraph wigtobigwig
written by Dora • Dora
0 votes
0 replies
690 views
Forum: Field of Study in Computational Biology
genomics computational-biology phd
updated by Ram Ram • written by Mohammed • Mohammed
0 votes
2 replies
734 views
FASTA/FASTQ files of fetal Aneuploids
nipt
written by lolbye_1 • lolbye_1
0 votes
0 replies
397 views
comparing sc-seq combination and bulk-sequencing
bulk-sequencing sc-sequencing
written by 润达 • 润达
0 votes
1 reply
858 views
Finding homologous protein sequence using blastp led to the same sequence as output
blastp
updated by Mensur Dlakic Mensur Dlakic • written by hamid sta • hamid sta
0 votes
1 reply
776 views
Where to download DOCK 6.11?
docking
updated by ATpoint ATpoint • written by tsakeliz • tsakeliz
0 votes
1 reply
765 views
BRIG coverage.graph issues
brig sam
updated by Pierre Lindenbaum Pierre Lindenbaum • written by dlera.lozano • dlera.lozano
0 votes
0 replies
666 views
How to generate a comparative map using CGview?
genome map cgview
written by marongiu.luigi marongiu.luigi
0 votes
0 replies
674 views
Advice on telling if two SNPs are on the same haplotype
ldpair halplotype co-occurance gnomad snp
written by hello_bioinf • hello_bioinf
1 vote
1 reply
1.1K views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
clinical tcga-brca tcgabiolinks treatment-response tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by vibhamishra017 • vibhamishra017
1 vote
2 replies
1.1K views
RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditions
rna-seq deseq edger batch-effect degs
written by BioinfGuru BioinfGuru
0 votes
1 reply
935 views
Compute p-value, having log fold change
p-value fold-change
updated by Ram Ram • written by Ngrin • Ngrin
0 votes
2 replies
2.3K views
(ERR): "GRCh38_noalt_as" does not exist or is not a Bowtie 2 index Exiting now ...
alignment genomics bowtie bowtie2
updated by Ram Ram • written by Song • Song
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