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0 votes
1 reply
970 views
PCA script correction
correction script pca
updated by BioinfGuru 214 • | written by prity6459 0
0 votes
5 replies
1.5K views
Losing my mind with a VCF problem
vcf bcftools
updated by Michael Dondrup 5.6K • | written by a.beggs 6
0 votes
18 replies
4.5K views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome phg_v2 plants phg
written by b.contreras.moreira 49
2 votes
15 replies
10K views
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq igv mapping
updated by vague-barracuda-4686 0 • | written by Apprentice 19
0 votes
6 replies
1.9K views
Need help understanding core SNPs
snps snippy
written by ujichu 0
0 votes
1 reply
770 views
genome.fa to indix files to use it in rna-seq analysis
rna-seq hisat2 index
updated by GenoMax 16K • | written by Hasan_Daaboul 0
1 vote
1 reply
1.6K views
Tutorial: Parsing HMMER output
hmmer
updated by Filipe 0 • | written by I0110 16
0 votes
5 replies
2.3K views
Searching for gene in multiple genomes
gene genome alignment sequence
updated by BioinfGuru 214 • | written by Miya 0
0 votes
0 replies
1.1K views
Only positive enrichment score in GSEA
enrichmentanalysis clusterprofiler gsea bioconductor rnaseq
written by enee 2
0 votes
10 replies
3.3K views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
written by dzisis1986 7
0 votes
0 replies
781 views
How to identify the phylogenetic node age of RNAs?
phylogeny genome evolution rna-seq
written by Apex92 32
0 votes
9 replies
2.0K views
Intersect genomic locations with genes
fanc chromatin conformation hic hic
updated by zx8754 1.2K • | written by naveedhasan2000 1
0 votes
3 replies
1.1K views
How to proceed with downstream analysis after tumor-only snp calling using Varscan2?
snv compressing varscan bcftools
written by kabir.deb 9
0 votes
0 replies
611 views
Questions on demultiplexing using Qiime2
demultiplexing barcode
written by Minh 0
1 vote
3 replies
4.9K views
How to remove variants with 3+ alleles present Plink1.9
haplotypecaller gatk plink1.9 vcftools
updated by Jingjingzhang 1 • | written by ramshahaya 2
0 votes
3 replies
1.4K views
RNAseq
r rna-seq linux
written by mrymrahimi70 0
0 votes
4 replies
1.8K views
calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
count2fpkm
updated by ATpoint 9.1K • | written by Niharika 0
0 votes
2 replies
1.2K views
Annotating indels and SNVs
annotation indels snv
written by am29 6
0 votes
4 replies
1.3K views
HISAT2 installation issue
hisat2
updated by GenoMax 16K • | written by eleven11 0
0 votes
8 replies
3.0K views
Fine-tuning NCBI taxid / taxidlist
blast taxonomy
written by theclubstyle 4
0 votes
0 replies
626 views
Problem encountered during Pearson Correlation Analysis between two immune cell subtypes
scrna-seq biostatistics
written by applepie 1
0 votes
14 replies
6.8K views
Not getting any modification calls in nanopore reads with dorado basecaller
mofications dorado basecalling nanopore methylation
updated by GenoMax 16K • | written by njornet 2
0 votes
6 replies
1.6K views
Download Panther entry list
panther
written by Nicolas 0
0 votes
0 replies
802 views
Troubleshooting SCTransform Error in Seurat: "Can't use NA as row index in a tibble for assignment"
sctransform
updated by Ram 4.5K • | written by Anisha 0
0 votes
0 replies
648 views
scRNA Cell Clustering Defined by Normalized Counts
normalization scrna seurat
written by sakura 0
0 votes
0 replies
654 views
Example - Meta Analysis TCGA and DepMap
meta-analysis tcga depmap
updated by Ram 4.5K • | written by joseph.landry 5
0 votes
4 replies
1.3K views
bcftools select sites with multiple combinations of FILTER column
bcftools
written by User000 75
0 votes
1 reply
920 views
Extract Umi sequence to readname
sequence fgbio umi
updated by GenoMax 16K • | written by Smilesky 0
0 votes
3 replies
2.6K views
Combining and Forward and Reverse Reads
genome alignment concatenation sequencing
written by SineWave 0
0 votes
1 reply
2.6K views
Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
cds genome ncbi genbank
updated by Ram 4.5K • | written by Sowmya Pulapet 7
0 votes
0 replies
1.6K views
Blog: WGBS vs RRBS
rrbs dna-methylation wgbs
updated by Ram 4.5K • | written by Novogene 54
0 votes
6 replies
1.7K views
Quest about the input data for PCA analysis
pca
written by tujuchuanli 14
0 votes
2 replies
1.1K views
How to visualize scRNA-seq normalized data
seurat 10x scrna-seq single-cell normalization
written by SlowSD 0
0 votes
1 reply
847 views
Disease Prevalence Database/Disease Incidence Database
prevalence
updated by Ram 4.5K • | written by Shicheng Guo 963
0 votes
6 replies
2.3K views
Need consultation about my rna-seq workflow
rna-seq gene-expression
updated by Ram 4.5K • | written by markusz 1
0 votes
7 replies
4.0K views
cutadapt not trimming all adapters in PE Illumina sequencing
ngs illumina cutadapt
written by noodle 65
0 votes
1 reply
958 views
Using multiple reference genomes for alignment in dorado?
dorado basecall ont alignment
updated by GenoMax 16K • | written by gideonav 0
0 votes
1 reply
930 views
Automatic protein symmetry classification from PDB coordinates
pdb symmetry protein
updated by Mensur Dlakic 3.0K • | written by Kartik 0
0 votes
7 replies
2.6K views
'Invalid parameter' error to generate a count matrix using featurecounts
rna-seq featurecounts
updated by GenoMax 16K • | written by Shay 0
0 votes
1 reply
1.0K views
Find out shared differentially expressed genes between two cell lines due to knockdown treatment
differential-gene-expression rna-seq
updated by Ram 4.5K • | written by Xinqi 0
1 vote
16 replies
7.4K views
visualize CNV data based on WGS
cnv
updated by clealk 8 • | written by Bogdan 144
0 votes
1 reply
798 views
Seeking for edgeR TMM Normalization calcul example
tmm edger deseq2
updated by jared.andrews07 1.9K • | written by Picasa 71
0 votes
0 replies
793 views
Tool: MicrobiomePhylo: A Comprehensive Platform for Advanced Microbiome Amplicon Sequencing Data Analysis and Visualization
microbiome analysis data 16s
written by camillatafuro 0
0 votes
0 replies
538 views
Tool for power calculation in GWAS for quantative trait
trait quantative power calculation gwas
written by chevivien 9
0 votes
1 reply
1.3K views
Advice for genetic diversity stats analysis with both variant and variant sites
pi diversity vcf genetics
updated by dthorbur 350 • | written by ekirsch 0
0 votes
1 reply
720 views
How to find and visualize expression level of a dataset?
r
updated by BioinfGuru 214 • | written by uveyik 0
0 votes
3 replies
1.4K views
How to validate the assembly completeness of unaligned reads ?
masurca spades
updated by GenoMax 16K • | written by Sony Nguyen 2
0 votes
3 replies
1.9K views
Maximum returned records using epost?
e-utilities biopython
updated by GenoMax 16K • | written by theclubstyle 4
0 votes
1 reply
824 views
PEAR seems to have sense to me
pear
updated by GenoMax 16K • | written by ManuelDB 11
0 votes
1 reply
828 views
Interprete plot of dispersion estimation by DESeq2
dispersion dexseq deseq2
updated by Pierre Lindenbaum 17K • | written by tien 4
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