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0 votes
2 replies
983 views
Upset plot
upsetplot
written by Chris • Chris
0 votes
1 reply
690 views
Are there any tools for mutational analysis of viruses?
virus
updated by Ram Ram • written by joey • joey
0 votes
6 replies
2.7K views
How to corrected test statistics based on the LDSC intercept?
ldsc intercept
written by Isaac • Isaac
0 votes
2 replies
1.1K views
I can't add VAF from population for all of my variants from VCF file
vaf vcf genomics gnomad allelicfrequency
written by Samuel • Samuel
0 votes
0 replies
499 views
Analyzing differentially methylated regions from Nanopore long read data?
long-read-sequencing methylation
updated by Ram Ram • written by Arton • Arton
0 votes
2 replies
1.3K views
Seeking help with Tcga Target Gtex Expected Count Data
r tcga gtex
written by bioinfo_enthusiast • bioinfo_enthusiast
0 votes
1 reply
1.0K views
Issues with "chanw0/MRS" R package and dependencies
ancombc densvis chanw0mrs scater
written by emi-smiley • emi-smiley
1 vote
0 replies
548 views
How should I regenotype VCFs using vg?
vg
written by Ricky • Ricky
0 votes
2 replies
1.0K views
What GC content should I expect?
rna-seq gc-content
updated by ATpoint ATpoint • written by BioinfGuru BioinfGuru
0 votes
0 replies
388 views
stat test
stattest chi2
updated by GenoMax GenoMax • written by NLL • NLL
0 votes
6 replies
2.1K views
How to look up gene names using SNP locations on Practical Haplotype Graph
rphg phg
updated by lcj34 lcj34 • written by Dylan • Dylan
0 votes
0 replies
597 views
Anvio HMM source campbell_et_al
anvio
updated by Ram Ram • written by Hayler Edu • Hayler Edu
0 votes
1 reply
1.1K views
Reactome Species Comparison - analysis table
reactome
updated by NancyTLi • NancyTLi • written by a11msp a11msp
0 votes
1 reply
1.6K views
Fold change vs signal p-value in ENCODE ATAC-seq
encode bigwig atac-seq
updated by LChart LChart • written by barcagro • barcagro
0 votes
1 reply
908 views
Issue with bigWigSummary utility of Kent/UCSC utilities
bigwig ucsc
updated by Pierre Lindenbaum Pierre Lindenbaum • written by eeb74 • eeb74
0 votes
3 replies
1.5K views
'incomplete' intersect among two files
bedtools bed intersect
written by Lila M Lila M
0 votes
1 reply
1.1K views
deepTools computeMatrix output import into R for enrichment calculations
r deeptools computematrix deeptools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by eeb74 • eeb74
0 votes
2 replies
1.3K views
BAM to CRAM and BAM recover with smaller size
bam samtools cram
updated by jkbonfield jkbonfield • written by geocarvalho geocarvalho
0 votes
0 replies
572 views
admixfrog for high-coverage data
introgression
written by gubrins gubrins
0 votes
5 replies
2.3K views
VCF file not being indexed, decided to sort could not sort
bcftools
updated by LChart LChart • written by hgrsce • hgrsce
0 votes
2 replies
2.1K views
How to Modify Reference Sequence and Annotation Files
reference edit annotation
updated by yeastbuddy • yeastbuddy • written by LDT • LDT
0 votes
3 replies
1.4K views
representing PCs as marginal distribution on x and Y acis
pcatool deseq2 pcaplot pca
updated by Papyrus Papyrus • written by Yogesh • Yogesh
0 votes
3 replies
1.9K views
Calculation of λ1000 for a continuous trait
snp gwas inflation
written by Apprentice Apprentice
0 votes
2 replies
1.2K views
With DESeq2 "Not full rank" Error with design
deseq2
written by feather-W • feather-W
1 vote
1 reply
1.0K views
Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
single analysis cell preprocessing
updated by GenoMax GenoMax • written by monklod • monklod
0 votes
1 reply
1.5K views
updateR() error
r update
updated by dthorbur dthorbur • written by marco.barr • marco.barr
0 votes
0 replies
618 views
Haplotype Phasing from Yeast strains
yeast haplotype phasing
written by Sven K • Sven K
0 votes
3 replies
1.4K views
Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
mutations vcf somatic varscan2 samtools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Samuel • Samuel
0 votes
2 replies
1.1K views
compare dimplot(single cell)
deg scrnaseq
written by kayah • kayah
0 votes
1 reply
944 views
Edit erroneous line using bcftools
awk vcf grep bcftools
updated by GenoMax GenoMax • written by Claire1203 • Claire1203
0 votes
0 replies
735 views
News: Online course on Genome Assembly and Annotation (1 seat left)
galaxy genomeassembly genomeannotation
written by Physalia-courses Physalia-courses
1 vote
1 reply
894 views
Doplot to display 2 metadata variables
single-cell seurat analysis dotpolot
updated by fracarb8 fracarb8 • written by Jessica • Jessica
0 votes
1 reply
941 views
--busco_db and --busco_seed_species with RNA-seq
rna-seq funannotate busco
written by san96 • san96
0 votes
3 replies
1.6K views
Forum: Development plan for a bioinformatics database developer/coder
developer
written by pixie@bioinfo pixie@bioinfo
0 votes
3 replies
2.2K views
Strandness of Isoseq HiFi reads?
minimap2 pacbio isoseq
updated by Shiyi • Shiyi • written by compuTE compuTE
0 votes
0 replies
744 views
Computational Package to engage Type 2 Diabetes Knowledge Portal (T2DKP)
workflow package
written by Shicheng Guo Shicheng Guo
0 votes
3 replies
1.7K views
Mathematical/Statistical models to predict mRNA half-life
mrna half-life
updated by i.sudbery i.sudbery • written by Shicheng Guo Shicheng Guo
0 votes
1 reply
1.1K views
Demultiplexing scRNAseq data using popscle
segmentation-fault demultiplex popscle
written by valentinapazom • valentinapazom
1 vote
8 replies
8.9K views
Forum: Bioinformatics career transition
career forum
updated by jared.andrews07 jared.andrews07 • written by jevill17 • jevill17
0 votes
5 replies
4.5K views
Single cell demultiplexing using 10x and TotalSeq-B
demultiplexing cellranger antibodies single-cell
written by txema.heredia • txema.heredia
0 votes
1 reply
875 views
Pathway activity in Bulk-RNA-SEQ analysis
r rna-seq transcriptomics
updated by jared.andrews07 jared.andrews07 • written by PBC • PBC
0 votes
2 replies
1.0K views
Error executing MEGAHIT
linux terminal megahit
updated by GenoMax GenoMax • written by Kárita • Kárita
0 votes
5 replies
3.4K views
Overriding a color palette in R to emphasize specific data points
r ggplot2
updated by swbarnes2 swbarnes2 • written by jen • jen
0 votes
8 replies
3.5K views
Using aspera-connect to UPLOAD fastq files to ENA on Linux
ena aspera-connect ascp
updated by jude • jude • written by sue.jones • sue.jones
1 vote
2 replies
1.9K views
Missing protein (VEGF-A) in String db
vgfa stringdb
updated by shalespringer • shalespringer • written by Phenylananin • Phenylananin
1 vote
0 replies
797 views
News: NCBI's ClinVar now accepting somatic variation data
variation ncbi somatic-variants clinvar
written by PeterC_NCBI • PeterC_NCBI
0 votes
5 replies
3.3K views
implementation of k-mer counting from krakenuniq to kraken2
metagenomics kraken2 kraken krakenuniq classification
updated by h.mon h.mon • written by aziznasr1920 • aziznasr1920
0 votes
2 replies
2.1K views
converting VCF files to TSV file
vcfmutations variantcellformat
updated by b.contreras.moreira • b.contreras.moreira • written by realtreeecat • realtreeecat
2 votes
1 reply
768 views
lncRNA and ncPEPs identification
lncrna
updated by Yahel • Yahel • written by atharvakarkare14 • atharvakarkare14
0 votes
0 replies
681 views
Music2 human to mouse deconvolution
deconvolution liftover music2
written by rbronste rbronste
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