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ramshahaya
ramshahaya
Reputation:
20
Joined:
7.3 years ago
Last seen:
2.8 years ago
Location:
Poland
Latest posts by user
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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
agilent interval_list haplotypecaller target_enrichment_list gatk
written by ramshahaya • ramshahaya
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Comment: Comment: identification of ROH using plink
written by ramshahaya • ramshahaya
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0 replies
778 views
Query reagrding Plink merging
vcf plink1.9 gatk bcftools
updated by Ram Ram • written by ramshahaya • ramshahaya
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0 replies
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
written by ramshahaya • ramshahaya
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated by zx8754 zx8754 • written by ramshahaya • ramshahaya
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1 reply
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
written by ramshahaya • ramshahaya
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4 replies
1.9K views
How to get information (Count) of Unique Mapped Reads to the Genome?
samtools bwa
written by ramshahaya • ramshahaya
1 vote
3 replies
4.8K views
How to remove variants with 3+ alleles present Plink1.9
haplotypecaller gatk plink1.9 vcftools
updated by Jingjingzhang • Jingjingzhang • written by ramshahaya • ramshahaya
0 votes
1 reply
1.1K views
Understand Bedtools coverage output
bedtools coverage
updated by kalavattam • kalavattam • written by ramshahaya • ramshahaya
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Comment: Comment: Haplotype Caller GATK Query
written by ramshahaya • ramshahaya
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Comment: Comment: Haplotype Caller GATK Query
written by ramshahaya • ramshahaya
0 votes
1 reply
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Comment: Comment: Haplotype Caller GATK Query
written by ramshahaya • ramshahaya
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Comment: Comment: targeted resequencing data analysis
written by ramshahaya • ramshahaya
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2 replies
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Comment: Comment: Haplotype Caller GATK Query
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ramshahaya • ramshahaya
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9 replies
3.2K views
Haplotype Caller GATK Query
sequencing enrichment target gatk-haplotype-caller
written by ramshahaya • ramshahaya
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0 replies
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Comment: Comment: SnpEff Query
written by ramshahaya • ramshahaya
1 vote
1 reply
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Comment: Comment: SnpEff Query
written by ramshahaya • ramshahaya
0 votes
4 replies
1.9K views
SnpEff Query
snpeff gatk annotation
written by ramshahaya • ramshahaya
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0 replies
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Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
written by ramshahaya • ramshahaya
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