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HISAT2 installation issue

Hello I am trying to run HISAT2. Everytime I run make I get the attached warnings. What does it mean and how can I fix it? Thank you! enter image description here

hisat2
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updated by GenoMax GenoMax • written by eleven11 • eleven11

1 answer

these are just warnings.

I think you can remove the warnings by changing things like

"ACGT"[ref[start+i]]

by

"ACGT"[(unsigned int)ref[start+i]]
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written by Pierre Lindenbaum Pierre Lindenbaum

Hello! Thank you for your quick reply! When I try to run HISAT commands it saids commands not found so I believe that it isn't installed properly. I am also not familiar with command line so how would I what you recommended. Thank you again!

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written by eleven11 • eleven11

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