This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
1.6K views
Annotate genes from gtf file to vcf file
gtf genomics vcf
written by QX 9
1 vote
3 replies
1.2K views
Read length distribution of whole genome sequnces of human
fastq read fastqc
written by Yellapu 0
0 votes
1 reply
733 views
Adding gene to GRange objects with single base
granges genomics
updated by ATpoint 9.1K • | written by QX 9
0 votes
2 replies
1.1K views
Infering the cell composition from bulk RNA-seq data for mouse
rna-seq deconvolution mouse
written by feather-W 0
0 votes
2 replies
1.1K views
Gene set to perform GSVA
gsva
written by CTLong 14
1 vote
5 replies
1.6K views
How to find gene ids for Pfam ids?
pfam gene
written by WUSCHEL 94
0 votes
4 replies
1.6K views
Pearson correlation between Gene and clinical parameters
read-counts pearson-correlation
updated by Shred 163 • | written by Mary 0
0 votes
1 reply
891 views
Capped expression values in single cell RNAseq (Tabula Sapiens/scanpy/CellXGene)
scanpy cellxgene scrna-seq 10x normalisation
written by matt.a.bennett25890 3
0 votes
1 reply
1.1K views
RNA-seq scaling the data for heatmap
rna-seq heatmap scaling
updated by matt.a.bennett25890 3 • | written by maplewj 2
0 votes
11 replies
2.2K views
bedToBigBed error, what am I doing wrong?
homer software-error ucsc
updated by Pierre Lindenbaum 17K • | written by Ronin 1
1 vote
2 replies
2.4K views
R: How to customize the legend order for a 3D scatter plot in plotly?
r r plotly
written by SIV0625TriX 3
0 votes
3 replies
5.5K views
Single cluster spanning in different locations in UMAP in scRNAseq data
umap scrnaseq
written by sarahmanderni 13
0 votes
4 replies
1.4K views
Biostrings extract read
r fastq biostrings
written by marco.barr 22
0 votes
2 replies
1.2K views
Detecting viruses in human rna seq data
rna-seq viruses
updated by GenoMax 16K • | written by biochugs 0
0 votes
0 replies
618 views
Change orig.ident column in seurat meta.data to match cell barcode sample prefixes
seurat
written by bgbs 0
0 votes
2 replies
1.2K views
Length by gene from salmon
salmon rna-seq
written by marco.barr 22
0 votes
4 replies
2.7K views
change order of violin plots in ggplot2
r ggplot2 violin-plots
updated by Ram 4.5K • | written by Matteo Ungaro 16
0 votes
0 replies
693 views
Motif analysis by HOMER
homer
written by daffodil 1
0 votes
2 replies
1.8K views
Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
soupx scrna-seq
written by e.r.zakiev 26
0 votes
5 replies
2.4K views
Error when trying to install R package 'scater'
scater scrna-seq
updated by Ram 4.5K • | written by Nitin 0
0 votes
4 replies
2.4K views
Long branch lengths, low bootstrap values and misalignments
mafft muscle iqtree
written by samyu.senthil 1
2 votes
5 replies
2.1K views
Including reference genome in SNP-based phylogeny
phylogeny vcf wgs
written by maxrwjones 7
1 vote
5 replies
1.4K views
How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
vcf bcftools
updated by Pierre Lindenbaum 17K • | written by Марта 0
0 votes
1 reply
963 views
adding new assemblies to previously built practical haplotype graph (v2)
pangenome phg_v2 plants phg
updated by lcj34 42 • | written by b.contreras.moreira 49
0 votes
2 replies
1.4K views
Ribo and RNA seq analysis
rna-seq genomics ribo-seq
updated by Jack Tierney 45 • | written by Manu Ayllon 0
0 votes
0 replies
761 views
DADA2 truncLen value
metabarcoding phyloseq dada2 illumina
written by Bioinfo 2
0 votes
3 replies
1.1K views
Resources regarding Proteomics (In-Silico)
molecular-simulation docking protein proteomics
updated by Ram 4.5K • | written by Saurabh 0
0 votes
5 replies
2.5K views
Deeptools scale issue for plotHeatmap
deeptools computematrix plotheatmap
written by Learner 0
1 vote
1 reply
1.9K views
why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
written by mathavanbioinfo 8
0 votes
5 replies
1.8K views
Haddock 2.4
protein docking
updated by dthorbur 350 • | written by Preeti 0
0 votes
2 replies
3.6K views
Beagle Phasing and Imputation
imputation phasing beagle
written by Duarte Molha 24
1 vote
0 replies
602 views
ENVO Ontology to Annotate Plain Text
natural language nl ontology envo
written by marie.harmel 1
0 votes
4 replies
7.9K views
Subsetting Seurat object based on list of cell barcodes
seurat
updated by Ming Tommy Tang 469 • | written by bgbs 0
28 votes
16 replies
25K views
Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen gdc r tcga
updated by aUser 8 • | written by martinguerrerog89 31
0 votes
1 reply
794 views
Issues With Cram -> Fastq from GTEx v8 WGS
fastq gtex cram
updated by Pierre Lindenbaum 17K • | written by Vullnet 0
0 votes
2 replies
1.2K views
DEG (Differential expression gene) analysis
deg r
updated by dsull 781 • | written by sooni 2
0 votes
2 replies
1.1K views
Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
rna-seq biobambam picard
written by kcarey 0
0 votes
0 replies
632 views
News: Online course: Adaptation Genomics
structuralvariants selection adaptationgenomics populationstructure
written by Physalia-courses 281
0 votes
0 replies
504 views
News: Online course: Analysis of Prokaryotic Pangenomes
bacterialgenomics pangenomics
written by Physalia-courses 281
0 votes
2 replies
1.3K views
Is it better to pool samples prior to running deseq2, or should the algorithm be run separately for every pool?
deseq2 rna-seq
written by Shelby 0
0 votes
8 replies
1.9K views
Expert Guidance Required for De Novo Transcriptome Analysis
transcriptome de-novo
updated by GenoMax 16K • | written by ben@f 2
0 votes
1 reply
1.3K views
Downloading epigenetic and mutation data of specific TCGA BRCA samples
mutation rna-seq tcga
updated by aUser 8 • | written by Soura 0
0 votes
5 replies
2.0K views
Differential express genes in imbalance groups
limma
written by Chris 36
0 votes
1 reply
900 views
basal gene expression level
rna-seq
updated by LChart 518 • | written by Francois Piumi 8
0 votes
0 replies
679 views
Evaluating MAST model fit using AIC
cell single mast scrna transcriptomics
written by mhale 4
0 votes
1 reply
1.0K views
Seurat 5 integration
integration seurat
updated by jared.andrews07 1.9K • | written by sarahmanderni 13
0 votes
5 replies
1.9K views
scRNAseq normalization
scrna-seq sct
updated by ATpoint 9.1K • | written by sarahmanderni 13
0 votes
7 replies
3.0K views
Transcription Start Site
tss
updated by Ming Tommy Tang 469 • | written by Fatemeh Nabizadeh 1
0 votes
0 replies
627 views
Limma contrasts - difference between single and multiple concurrent contrasts results
r limma
updated by Ram 4.5K • | written by shasabhi1 0
0 votes
0 replies
521 views
Genotype simulation
gwas simulation sim1000
updated by Ram 4.5K • | written by Eliza 3
Recent Votes
Recent Locations
Recent Replies