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1 vote
2 replies
1.1K views
Problem with .bed file
cygwin64 bed plink
updated by Ram 4.5K • | written by Dinmukhamed 1
0 votes
1 reply
1.9K views
compareCluster's enrichGO difference in results when stating ont = "ALL" vs NULL
enrichgo clusterprofiler
updated by Dunois 301 • | written by TIANTHING JESTLIN 0
0 votes
0 replies
687 views
Remove SNPs based on MAF in Fst analysis
snp maf fst popgenome
written by kopelol 2
2 votes
2 replies
1.2K views
Before or after LD clumping for PRS calculation in GWAS
gwas
written by K Lee 2
0 votes
2 replies
1.9K views
Trim Galore: Automatic detection of adapters
trimgalore
written by Daniel 4
1 vote
3 replies
1.9K views
Troubleshooting a REGENIE sex-stratified GWAS
gwas regenie
updated by Corentin 66 • | written by s.may-wilson 6
0 votes
4 replies
1.3K views
Average expression of a sample in single-cell data
single-cell rna-seq
written by newuser2024 0
0 votes
6 replies
2.1K views
blastn: 2.2.31+ Package: blast 2.2.31, build Jun 2 2015 10:47:46
blastn blast ubuntu
updated by SequenceServer 15 • | written by Luca 0
0 votes
1 reply
627 views
turning old shell ncbi querys into url querys
eutils ncbi
updated by GenoMax 16K • | written by Guelakais 0
0 votes
1 reply
1.7K views
ArchR Doublet Inference to Signac
signac scatac-seq archr
updated by fracarb8 176 • | written by bioinformatics.girl 3
0 votes
10 replies
2.8K views
t-test in two groups, multiple rows
r t-test
written by sooni 2
0 votes
4 replies
3.7K views
sam.gz files to bam using samtools
rna-seq samtools
updated by robertoalbanese.bioinfo 0 • | written by tikshyadav19 0
0 votes
4 replies
1.2K views
error in wigToBigWig while converting mappability to bedgraph
mappability gem bedgraph wigtobigwig
written by Dora 1
0 votes
0 replies
699 views
Forum: Field of Study in Computational Biology
genomics computational-biology phd
updated by Ram 4.5K • | written by Mohammed 0
0 votes
2 replies
738 views
FASTA/FASTQ files of fetal Aneuploids
nipt
written by lolbye_1 0
0 votes
0 replies
400 views
comparing sc-seq combination and bulk-sequencing
bulk-sequencing sc-sequencing
written by 润达 0
0 votes
1 reply
862 views
Finding homologous protein sequence using blastp led to the same sequence as output
blastp
updated by Mensur Dlakic 3.0K • | written by hamid sta 1
0 votes
1 reply
781 views
Where to download DOCK 6.11?
docking
updated by ATpoint 9.1K • | written by tsakeliz 0
0 votes
1 reply
783 views
BRIG coverage.graph issues
brig sam
updated by Pierre Lindenbaum 17K • | written by dlera.lozano 1
0 votes
0 replies
673 views
How to generate a comparative map using CGview?
genome map cgview
written by marongiu.luigi 79
0 votes
0 replies
679 views
Advice on telling if two SNPs are on the same haplotype
ldpair halplotype co-occurance gnomad snp
written by hello_bioinf 25
1 vote
1 reply
1.1K views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
clinical tcga-brca tcgabiolinks treatment-response tcga
updated by Zhenyu Zhang 130 • | written by vibhamishra017 1
1 vote
2 replies
1.2K views
RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditions
rna-seq deseq edger batch-effect degs
written by BioinfGuru 214
0 votes
1 reply
944 views
Compute p-value, having log fold change
p-value fold-change
updated by Ram 4.5K • | written by Ngrin 0
0 votes
2 replies
2.3K views
(ERR): "GRCh38_noalt_as" does not exist or is not a Bowtie 2 index Exiting now ...
alignment genomics bowtie bowtie2
updated by Ram 4.5K • | written by Song 0
0 votes
2 replies
998 views
Upset plot
upsetplot
written by Chris 36
0 votes
1 reply
691 views
Are there any tools for mutational analysis of viruses?
virus
updated by Ram 4.5K • | written by joey 1
0 votes
6 replies
2.7K views
How to corrected test statistics based on the LDSC intercept?
ldsc intercept
written by Isaac 0
0 votes
2 replies
1.2K views
I can't add VAF from population for all of my variants from VCF file
vaf vcf genomics gnomad allelicfrequency
written by Samuel 2
0 votes
0 replies
502 views
Analyzing differentially methylated regions from Nanopore long read data?
long-read-sequencing methylation
updated by Ram 4.5K • | written by Arton 2
0 votes
2 replies
1.3K views
Seeking help with Tcga Target Gtex Expected Count Data
r tcga gtex
written by bioinfo_enthusiast 0
0 votes
1 reply
1.0K views
Issues with "chanw0/MRS" R package and dependencies
ancombc densvis chanw0mrs scater
written by emi-smiley 1
1 vote
0 replies
551 views
How should I regenotype VCFs using vg?
vg
written by Ricky 1
0 votes
2 replies
1.1K views
What GC content should I expect?
rna-seq gc-content
updated by ATpoint 9.1K • | written by BioinfGuru 214
0 votes
0 replies
393 views
stat test
stattest chi2
updated by GenoMax 16K • | written by NLL 0
0 votes
6 replies
2.1K views
How to look up gene names using SNP locations on Practical Haplotype Graph
rphg phg
updated by lcj34 42 • | written by Dylan 0
0 votes
0 replies
602 views
Anvio HMM source campbell_et_al
anvio
updated by Ram 4.5K • | written by Hayler Edu 4
0 votes
1 reply
1.1K views
Reactome Species Comparison - analysis table
reactome
updated by NancyTLi 2 • | written by a11msp 12
0 votes
1 reply
1.6K views
Fold change vs signal p-value in ENCODE ATAC-seq
encode bigwig atac-seq
updated by LChart 518 • | written by barcagro 0
0 votes
1 reply
910 views
Issue with bigWigSummary utility of Kent/UCSC utilities
bigwig ucsc
updated by Pierre Lindenbaum 17K • | written by eeb74 0
0 votes
3 replies
1.5K views
'incomplete' intersect among two files
bedtools bed intersect
written by Lila M 130
0 votes
1 reply
1.1K views
deepTools computeMatrix output import into R for enrichment calculations
r deeptools computematrix deeptools
updated by Pierre Lindenbaum 17K • | written by eeb74 0
0 votes
2 replies
1.3K views
BAM to CRAM and BAM recover with smaller size
bam samtools cram
updated by jkbonfield 133 • | written by geocarvalho 40
0 votes
0 replies
578 views
admixfrog for high-coverage data
introgression
written by gubrins 35
0 votes
5 replies
2.3K views
VCF file not being indexed, decided to sort could not sort
bcftools
updated by LChart 518 • | written by hgrsce 0
0 votes
2 replies
2.1K views
How to Modify Reference Sequence and Annotation Files
reference edit annotation
updated by yeastbuddy 0 • | written by LDT 34
0 votes
3 replies
1.4K views
representing PCs as marginal distribution on x and Y acis
pcatool deseq2 pcaplot pca
updated by Papyrus 310 • | written by Yogesh 0
0 votes
3 replies
1.9K views
Calculation of λ1000 for a continuous trait
snp gwas inflation
written by Apprentice 19
0 votes
2 replies
1.2K views
With DESeq2 "Not full rank" Error with design
deseq2
written by feather-W 0
1 vote
1 reply
1.0K views
Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
single analysis cell preprocessing
updated by GenoMax 16K • | written by monklod 1
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