Entering edit mode
5 weeks ago
Guelakais
•
0
I used to work with a shell application for the eutils, which could do quite a lot and generated my querys with it. This no longer seems to work or has been outdated. I know that the url api can theoretically do just as much. Does anyone know how to translate the following query into a url?
esearch -db nuccore -query "Sclerotinia sclerotiorum 1980 [TITLE]" | efilter -molecule mrna | efetch -format fasta > s_sclerot.fa
I also know what the beginning is. I am currently failing to plug the following query parts
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nuccore&term=Sclerotinia/sclerotiorum/1980/[TITLE]