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0 votes
1 reply
990 views
Download all phytochemicals from IMPPAT database
phytochemicals docking imppat
written by goyalsamta2609 • goyalsamta2609
0 votes
0 replies
560 views
How to extract particular gene(genbank) from mitochandrial genome lists (genbank)?
genbank
written by kuttibiotech2009 • kuttibiotech2009
0 votes
1 reply
986 views
VEP fail to annotate NCBI refseq GFF
vep variant
written by bharata1803 bharata1803
0 votes
0 replies
625 views
Relative abundance output from qiime2
relative-abundance classification qiime2 taxon
updated by Ram Ram • written by arunsaikirans • arunsaikirans
0 votes
2 replies
1.0K views
How to get genes in a gene set in msigdb?
msigdb
written by Chris • Chris
0 votes
2 replies
738 views
I am trying to generate a bcf file using samtools mpileup, is this suppose to happen?
samtools mpileup
updated by Ram Ram • written by K • K
0 votes
3 replies
1.5K views
Can Metal merge two GWAS Summary data even if the versions of SNP id are different?
grch37 grch38 metal
written by qq • qq
0 votes
0 replies
621 views
Differentially expressed genes across condition
singlecell
written by synat.keam • synat.keam
0 votes
4 replies
1.8K views
What are the best HW p-value & MAF cutoffs based on my study ?
maf p-value hwe
written by mona.patoughi • mona.patoughi
0 votes
6 replies
2.7K views
Kallisto returns 'illegal instruction' when running commands
kallisto rna-seq
updated by GenoMax GenoMax • written by Eleanor • Eleanor
0 votes
0 replies
577 views
Function normalize raw microarray data for GSVA
gsva
written by Chris • Chris
0 votes
2 replies
1.9K views
I do not understand how to get total peaks from MACS2 shown to me. What mistake(s) am I making here?
atacseq macs
written by Ronin • Ronin
0 votes
1 reply
988 views
Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files
variant-calling vcf bcftools
updated by Ram Ram • written by sardana.thakur.prachi • sardana.thakur.prachi
1 vote
1 reply
2.7K views
Error in changing the annotation color of pheatmap
r package pheatmap
updated by fracarb8 fracarb8 • written by applepie • applepie
0 votes
0 replies
688 views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
written by sina.majidian • sina.majidian
0 votes
2 replies
991 views
How to interpret merged_calls result of command line from CNVpytor
cnvpytor
updated by GenoMax GenoMax • written by Nannapat • Nannapat
0 votes
1 reply
3.0K views
Segmentation fault for cd-hit
software-error
updated by GenoMax GenoMax • written by Crystal • Crystal
0 votes
2 replies
1.4K views
How do I collapse rows of a tibble in R?
r tidyverse tibble collapse
written by BioinfGuru BioinfGuru
0 votes
6 replies
2.3K views
cutadapt tool
cutadapt
updated by Brian Bushnell Brian Bushnell • written by Eshwari • Eshwari
0 votes
1 reply
1.2K views
Sequence Duplication Levels in targeted sequencing
fastqc pcr sequencing
updated by Brian Bushnell Brian Bushnell • written by Shaghayegh • Shaghayegh
0 votes
6 replies
2.1K views
Target deletions with adaptive sampling
microdeletions nanopore adaptivesampling
written by njornet • njornet
1 vote
5 replies
8.1K views
how to know what adapter sequences to trim for RNA-seq?
fastq rna-seq cutadapt
updated by Brian Bushnell Brian Bushnell • written by lunarskye222 • lunarskye222
0 votes
3 replies
2.1K views
Variant caller for Ion Torrent data
thermofisher ngs iontorrent genomics variant-calling
updated by Brian Bushnell Brian Bushnell • written by adarsh • adarsh
0 votes
12 replies
3.7K views
Processing fastq files for genome assembly
fastq vcf assembly amino-acid
updated by Brian Bushnell Brian Bushnell • written by Neil • Neil
0 votes
0 replies
666 views
different protocols for rapid nanopore sequencing starting from solid tumor
solid tumor nanopore oxford sequencing
updated by GenoMax GenoMax • written by LauferVA LauferVA
0 votes
0 replies
539 views
Questions regarding Boundary Conditions for Adaptive Sequencing for Oxford Nanopore
adaptive sampling nanopore oxford sequencing
written by LauferVA LauferVA
0 votes
2 replies
1.3K views
Problem merging plink files for somatic variants.
plink somatic vcf
written by Palgrave • Palgrave
0 votes
8 replies
1.7K views
i'm trying to use STAR and there is a problem...
star
updated by GenoMax GenoMax • written by markusz • markusz
0 votes
2 replies
1.7K views
Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,Description="Estimated Posterior Probabilities for Genotypes 0/0, 0/1 and 1/1">
vcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by juan.sainz • juan.sainz
0 votes
0 replies
638 views
Gene Prediction Breaker3
prediction protein-seq gtf breaker3 gene
written by mathavanbioinfo mathavanbioinfo
1 vote
2 replies
1.4K views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein cafa5
written by Anatoly A. • Anatoly A.
0 votes
2 replies
1.1K views
How to save the output of VARSCAN results in different vcf names?
snv slurm output varscan
written by kabir.deb • kabir.deb
0 votes
5 replies
1.6K views
Is there a reason why fastq files from SRAExplorer and SRAToolkit are different sizes?
sraexplorer sratoolkit
updated by GenoMax GenoMax • written by biotrekker • biotrekker
0 votes
7 replies
2.4K views
Getting fasta file from the VCF after variant calling
fastq pangolin assembly
updated by Michael Dondrup Michael Dondrup • written by Neil • Neil
0 votes
1 reply
918 views
convert and merge somatic vcf file to plink format
gwas plink vcf
updated by LChart LChart • written by Palgrave • Palgrave
0 votes
1 reply
903 views
Get read counts without GTF/GFF files
rna-seq
updated by GenoMax GenoMax • written by weather • weather
1 vote
0 replies
518 views
Using TidyEstimate scores in the Design Matrix of DESeq2
estimate deseq2 tidyestimate rnaseq
written by Abhishek • Abhishek
0 votes
6 replies
1.6K views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
written by rj.rezwan • rj.rezwan
0 votes
0 replies
706 views
DESeq stats or Wilcoxon auc scores as input in pathway analysis
pathway-analysis
updated by Ram Ram • written by leranwangcs • leranwangcs
0 votes
0 replies
772 views
Experience with copykat
copykat
written by Nona • Nona
0 votes
1 reply
1.0K views
Analyzing scRNA seq data and want to analyze it's DEG with DESeq2
scrna-seq deg deseq2
written by kayah • kayah
1 vote
4 replies
1.3K views
What should be used as a "baseline" in pooled CRISPR screen?
crispr mageck facs
written by Aleksandr • Aleksandr
0 votes
12 replies
3.4K views
bbmap read length from fastq
fastq bbmap
updated by GenoMax GenoMax • written by marco.barr • marco.barr
0 votes
1 reply
1.0K views
how to add non-reference genes to BED file of intervals for PHG
pangenome plants phg
updated by lcj34 lcj34 • written by b.contreras.moreira • b.contreras.moreira
0 votes
2 replies
986 views
GFF reformator
gff
updated by GenoMax GenoMax • written by HERMAN • HERMAN
0 votes
0 replies
629 views
featureCounts micounts reads?
rna-seq gtf introns featurecounts
written by tessa2525 • tessa2525
0 votes
1 reply
1.1K views
Having problems doing the Hisat2 alignment
hisat2
updated by ATpoint ATpoint • written by 2385676601 • 2385676601
2 votes
3 replies
1.6K views
Inflation in Imputed data
genomic immunochip inflation topmed
updated by Amy • Amy • written by desicasares • desicasares
0 votes
0 replies
536 views
Tools for eQTL and somatic mutation analysis of RNA-seq data
eqtl somatic-mutations rna-seq
updated by Ram Ram • written by malonzm1 • malonzm1
0 votes
3 replies
2.4K views
SHAPEIT5 phasing
shapeit vcf shapeit5
written by Michal Frenkel • Michal Frenkel
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