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0 votes
1 reply
1.5K views
updateR() error
r update
updated by dthorbur 350 • | written by marco.barr 22
0 votes
0 replies
626 views
Haplotype Phasing from Yeast strains
yeast haplotype phasing
written by Sven K 0
0 votes
3 replies
1.4K views
Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
mutations vcf somatic varscan2 samtools
updated by Pierre Lindenbaum 17K • | written by Samuel 2
0 votes
2 replies
1.1K views
compare dimplot(single cell)
deg scrnaseq
written by kayah 2
0 votes
1 reply
955 views
Edit erroneous line using bcftools
awk vcf grep bcftools
updated by GenoMax 16K • | written by Claire1203 0
0 votes
0 replies
743 views
News: Online course on Genome Assembly and Annotation (1 seat left)
galaxy genomeassembly genomeannotation
written by Physalia-courses 281
1 vote
1 reply
906 views
Doplot to display 2 metadata variables
single-cell seurat analysis dotpolot
updated by fracarb8 176 • | written by Jessica 1
0 votes
1 reply
956 views
--busco_db and --busco_seed_species with RNA-seq
rna-seq funannotate busco
written by san96 19
0 votes
3 replies
1.6K views
Forum: Development plan for a bioinformatics database developer/coder
developer
written by pixie@bioinfo 150
0 votes
3 replies
2.2K views
Strandness of Isoseq HiFi reads?
minimap2 pacbio isoseq
updated by Shiyi 4 • | written by compuTE 14
0 votes
0 replies
743 views
Computational Package to engage Type 2 Diabetes Knowledge Portal (T2DKP)
workflow package
written by Shicheng Guo 963
0 votes
3 replies
1.7K views
Mathematical/Statistical models to predict mRNA half-life
mrna half-life
updated by i.sudbery 2.3K • | written by Shicheng Guo 963
0 votes
1 reply
1.1K views
Demultiplexing scRNAseq data using popscle
segmentation-fault demultiplex popscle
written by valentinapazom 1
1 vote
8 replies
9.0K views
Forum: Bioinformatics career transition
career forum
updated by jared.andrews07 1.9K • | written by jevill17 2
0 votes
5 replies
4.6K views
Single cell demultiplexing using 10x and TotalSeq-B
demultiplexing cellranger antibodies single-cell
written by txema.heredia 31
0 votes
1 reply
880 views
Pathway activity in Bulk-RNA-SEQ analysis
r rna-seq transcriptomics
updated by jared.andrews07 1.9K • | written by PBC 1
0 votes
2 replies
1.0K views
Error executing MEGAHIT
linux terminal megahit
updated by GenoMax 16K • | written by Kárita 0
0 votes
5 replies
3.5K views
Overriding a color palette in R to emphasize specific data points
r ggplot2
updated by swbarnes2 1.5K • | written by jen 1
0 votes
8 replies
3.5K views
Using aspera-connect to UPLOAD fastq files to ENA on Linux
ena aspera-connect ascp
updated by jude 0 • | written by sue.jones 0
1 vote
2 replies
2.0K views
Missing protein (VEGF-A) in String db
vgfa stringdb
updated by shalespringer 1 • | written by Phenylananin 2
1 vote
0 replies
803 views
News: NCBI's ClinVar now accepting somatic variation data
variation ncbi somatic-variants clinvar
written by PeterC_NCBI 53
0 votes
5 replies
3.4K views
implementation of k-mer counting from krakenuniq to kraken2
metagenomics kraken2 kraken krakenuniq classification
updated by h.mon 3.5K • | written by aziznasr1920 1
0 votes
2 replies
2.1K views
converting VCF files to TSV file
vcfmutations variantcellformat
updated by b.contreras.moreira 49 • | written by realtreeecat 0
2 votes
1 reply
779 views
lncRNA and ncPEPs identification
lncrna
updated by Yahel 0 • | written by atharvakarkare14 4
0 votes
0 replies
685 views
Music2 human to mouse deconvolution
deconvolution liftover music2
written by rbronste 42
0 votes
2 replies
1.2K views
Weird Basecalled reads PHRED quality plot from pycoQC
pycoqc nanopore sequencing
written by njornet 2
0 votes
0 replies
676 views
computeGCBias outputs
gc bam deeptools gcbias
written by pablo 35
0 votes
10 replies
2.9K views
Intersect gene IDs list and GFF3 to get the annotation.
annotation gff
written by Lissa Cruz Saavedra 0
0 votes
0 replies
618 views
Pindel zygosity determination
depth vaf pindel zygosity
written by arya.sagittarius 1
0 votes
3 replies
1.5K views
How to predict the affinity between Protein and RNA?
protein-rnainteractions prediction deeplearning
updated by dthorbur 350 • | written by Alex 0
0 votes
3 replies
2.7K views
Snakemake's SyntaxError positional argument follows keyword argument
snakemake
updated by dariober 1.5K • | written by ema 1
1 vote
2 replies
1.4K views
Seeking Help with Cell Ranger Multi Error in fixed-RNA-profiling
chromium fixed-rna-profiling cellranger
updated by naveau 0 • | written by luminea 2
0 votes
3 replies
1.2K views
ONT methylation data background noise
data noise
updated by colindaven 844 • | written by marco.barr 22
1 vote
8 replies
6.3K views
Create Conda Environment with YAML File
python
updated by dthorbur 350 • | written by cthangav 11
0 votes
3 replies
3.3K views
ChipQC doesn't run
chip-seq
updated by armando_c2 0 • | written by francesca3 16
1 vote
4 replies
3.1K views
gnomAD4.0 Hail Table Downloading
ngs gnomad
updated by DBScan 53 • | written by adarsh 8
0 votes
6 replies
1.4K views
Protein loops
protein loop
written by Curious 1
0 votes
8 replies
9.1K views
Download CAZy database
genome gene database cazy
updated by GenoMax 16K • | written by anu014 19
54 votes
35 replies
25K views
Tutorial: Generating consensus sequence from bam file
fasta consensus bam
updated by Michael Dondrup 5.6K • | written by finswimmer 1.6K
0 votes
0 replies
946 views
Looking for guidance on Microbial Association Networks (MANs) Inference with samples from different metagenomics/metatranscriptomics studies
microbialassociationnetworks metatranscriptomics metagenomics netowrkbiology
written by sebasar1245 0
0 votes
1 reply
515 views
Bed file
bedfile
updated by Pierre Lindenbaum 17K • | written by Jeet 0
1 vote
1 reply
1.0K views
karyoploteR SNP density
snp vcf karyoploter
updated by Bastien Hervé 680 • | written by Kip 1
0 votes
0 replies
512 views
How can validate hub genes or significant factors using area under the ROC curve (AUC)?
r auc genes hub validation
written by wyt1995 4
0 votes
0 replies
855 views
Toxinpred 3.0 tool
peptide protein toxin toxicity
updated by zx8754 1.2K • | written by Saurabh 0
0 votes
1 reply
770 views
STAR --sjdbGTFfile in alignment step
star
updated by dsull 781 • | written by malonzm1 2
0 votes
3 replies
1.2K views
Microarray pbrobe ID to gene ID problem
microarray
updated by GenoMax 16K • | written by mnx0723 0
1 vote
1 reply
809 views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
emblproteomics
updated by dr.eldeib89 0 • | written by EMBL Events 2
0 votes
2 replies
828 views
Pipelines/packages for protein domain annotation?
annotation protein domains
written by John 0
0 votes
0 replies
426 views
Polysome profiling data
polysome
updated by Ram 4.5K • | written by Hasan_Daaboul 0
0 votes
0 replies
822 views
Job: Project Scientist in Neurobiology at UC San Diego
ucsd biology lifescience highereducation
written by UCSDBioSci 3
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