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ChipQC doesn't run

Hi everyone, I'm having troubles with ChipQC.

I load the samplesheet and I try to run the ChIPQC function but several errors appears:

chipObj<-ChIPQC(samples, annotation="mm9")

Bam file has 22 contigs
Error: BiocParallel errors
  element index: 1, 2, 3
  first error: don't find the function "seqlevels<-"
 Warning messages:
1: In serialize(data, node$con) :
  'package:stats' could not be available during the loading

Anyone can help?

Thanks
Francesca

chip-seq
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updated by armando_c2 • armando_c2 • written by francesca3 • francesca3

1 answer

I found the problem. There is a bug when the package is used from PC. It needs to launch this command register(SerialParam()) before launching the CHIPQC command

Thanks

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written by francesca3 • francesca3

Thank you for reporting this!

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written by psm psm

Worked for me as well!

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written by Stefan • Stefan

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