This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
1 reply
1.1K views
Running Pangolin
pangolin splicing
updated by Ram Ram • written by Sruthi • Sruthi
0 votes
2 replies
1.4K views
Re. Batch effect correction in data with a design matrix without full rank
deseq2 batch multi-factor
updated by swbarnes2 swbarnes2 • written by JB • JB
0 votes
7 replies
2.2K views
RNA Seq Sample Outlier
mds rna-seq
updated by ATpoint ATpoint • written by Emilie • Emilie
0 votes
3 replies
3.2K views
ANGeS - Ancestral Genome reconstruction
ancestral genome
updated by illodukarthickbabu • illodukarthickbabu • written by alslonik alslonik
0 votes
13 replies
3.2K views
Help with the new nomenclature of multi-nucleotide variants
bam igv multinucleotide
written by hello_bioinf • hello_bioinf
0 votes
5 replies
2.0K views
index fasta file for HaplotypeCaller
samtools haplotypecaller gatk faidx
written by Mojtaba • Mojtaba
0 votes
7 replies
1.8K views
single nuclei sequencing questions
fastq single-nuclei-sequencing
updated by Ram Ram • written by Long • Long
1 vote
1 reply
1.1K views
DESeq and SVA for batch effect
sva limma batch-effect deseq2
updated by LChart LChart • written by michelafrancesconi9 • michelafrancesconi9
0 votes
4 replies
1.5K views
How to merge VCF files from multiple samples and remove individual level information
vcf
written by Arton • Arton
0 votes
3 replies
1.4K views
How to download all expressed sequence tags (ESTs) for particular species from NCBI using command ?
ncbi est
updated by GenoMax GenoMax • written by Sony Nguyen • Sony Nguyen
0 votes
1 reply
986 views
How is it possible to differentiate CG or AT heterozygous in Illumina Infinium Genotype Microarrays?
heterozygous genotype microarray infinium illumina
updated by LChart LChart • written by igor.alcaras • igor.alcaras
0 votes
0 replies
776 views
Adding shapes from plotly R library to the phylogenetic tree tips generated by ggtree
r phylogenetic-tree ggtree plotly
updated by Ram Ram • written by Hann Hann
0 votes
7 replies
2.1K views
Need a link to OLDERADO server
pdb protein nmr structure
written by b2003 • b2003
0 votes
1 reply
1.5K views
Filtering VCF files with bcftools
vcf vcftools bcftools
updated by 4galaxy77 4galaxy77 • written by eleni.psar • eleni.psar
4 votes
2 replies
3.3K views
Tool: Coovar: Co-Occurring Variant Analyzer
snp variant-annotation
updated by GenoMax GenoMax • written by Christian Christian
0 votes
0 replies
519 views
Error in MetaPro pipeline at contig assembly
metatranscriptomics
updated by Ram Ram • written by styagi • styagi
0 votes
5 replies
2.0K views
Weird Fragment Length distribution multiQC
salmon rna-seq paired-end multiqc
updated by GenoMax GenoMax • written by _deb • _deb
0 votes
6 replies
1.6K views
single cell RNA seq integration(Error in UseMethod(generic = "as.sparse", object = x))
scrna-seq
written by kayah • kayah
0 votes
2 replies
1.8K views
no permission to install to directory
r
updated by Ram Ram • written by sooni • sooni
0 votes
5 replies
1.4K views
Issues with bcftools
bcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by hgrsce • hgrsce
0 votes
5 replies
1.9K views
Issues filtering VCF file with bcftools/vcftools
vcftools vcf bcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ekirsch • ekirsch
0 votes
9 replies
3.3K views
blast retrieves "N/A" for taxonomic data
blast blastn
updated by flavianegrete • flavianegrete • written by langziv • langziv
0 votes
4 replies
1.8K views
Why many organisms even though they possess mitochondrial DNA (mtDNA), it is not typically represented by chromosomes labeled as "mtDNA"?
genome mtdna reference-genome sequence
written by George X. • George X.
0 votes
6 replies
1.6K views
RNA indexing using STAR error
rna-seq star
updated by Ram Ram • written by Shay • Shay
0 votes
2 replies
1.1K views
How to extract mutations in a particular gene from the VCF file of whole genome
ngs mutations vcf
written by saamar.rajput saamar.rajput
0 votes
3 replies
1.4K views
Tools and software to visualize the moving cell compartments in 3D
3d-visualization cell-compartments
written by saamar.rajput saamar.rajput
0 votes
0 replies
509 views
Computational tools for mapping potential epitope regions using mimotope-based methods
mimotope phage epitope
written by ceciliadlcgg • ceciliadlcgg
0 votes
0 replies
589 views
Problem with blastdbcmd. “Error: [blastdbcmd] Skipped TRANSCRIPT/4865”
blast
updated by Ram Ram • written by elisamaarredondobel • elisamaarredondobel
0 votes
0 replies
949 views
Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated by Ram Ram • written by jv jv
0 votes
3 replies
1.8K views
STAR alignment setting for RNA-Seq data from mouse background expressing a human ortholog
alignment star ortholog rna-seq
updated by swbarnes2 swbarnes2 • written by marionette.kent • marionette.kent
0 votes
5 replies
3.3K views
(STAR) What causes a high number of reads that are unmapped because they are too short?
star rna-seq
updated by GenoMax GenoMax • written by becky.reese • becky.reese
1 vote
1 reply
1.2K views
robust linear regression with interaction term
r epigenetic biostatistics statistics
updated by Jeremy • Jeremy • written by Bioinfonext Bioinfonext
0 votes
3 replies
1.1K views
Help with mauve
mauve
updated by Ram Ram • written by reachedahead225 • reachedahead225
0 votes
5 replies
1.3K views
p-value on excel for different number of mutant samples vs WT samples
rna-seq biostatistics
updated by ATpoint ATpoint • written by abhatnagar • abhatnagar
0 votes
6 replies
2.4K views
Uploading HiC track on UCSC browser
custom_track ucsc hic
updated by Maximilian Haeussler Maximilian Haeussler • written by arsala521 • arsala521
0 votes
5 replies
2.3K views
Does salmon work with combined short and long read bam file?
salmon
updated by callumjcparr • callumjcparr • written by shinyjj • shinyjj
0 votes
1 reply
808 views
How does one create a custom VCF file?
genomics vcf
updated by Ram Ram • written by manfi • manfi
0 votes
0 replies
696 views
Slow Python Script Pulling Metrics from Remora Oxford Nanopore
nanopore remora long-read ont
updated by Ram Ram • written by turcoa1 • turcoa1
0 votes
2 replies
1.2K views
Considerations for nanopore adaptive sampling enrichment designing
adaptive-sampling nanopore
written by njornet • njornet
1 vote
3 replies
1.9K views
Need help in using cutadapt to trim paired end fastq reads
fastq primer paried-end cutadapt
updated by Ram Ram • written by George • George
0 votes
2 replies
983 views
WGCNA for co-expression network analysis
wgcna
written by Priya • Priya
0 votes
1 reply
650 views
Troubleshooting poor DP values
illumina gatk
updated by Pierre Lindenbaum Pierre Lindenbaum • written by manfi • manfi
1 vote
2 replies
1.2K views
Kmers unique mapping
kmc alignment bowtie kmers
written by enee • enee
0 votes
0 replies
715 views
How to get the minimun branch distance tree?
distance tree phylogenetics
written by Destineador • Destineador
0 votes
0 replies
641 views
How can we deal with converted probe id in microarray?
r microarray probe ensembl
updated by Ram Ram • written by wyt1995 • wyt1995
0 votes
12 replies
3.2K views
BWA MEM different synthax on linux (bash) and macOS (zsh)
mem bwa
written by gernophil • gernophil
0 votes
9 replies
2.9K views
Cutadapt error: too many parameters.
cutadapt parallel bash
updated by ATpoint ATpoint • written by DanielEB_fisk • DanielEB_fisk
0 votes
0 replies
533 views
Issue opening modified .gff file in Artemis
gff artemis
updated by Ram Ram • written by A_heath • A_heath
0 votes
0 replies
435 views
How can one determine if a sample size is representative in scRNA-seq analysis?
scrna-seq
written by fifty_fifty • fifty_fifty
40 votes
14 replies
24K views
Tutorial: Methylation Analysis Tutorial in R - Part 1
r cancer methylation
updated by BioNoobie • BioNoobie • written by Hamid Ghaedi Hamid Ghaedi
Recent Votes
Recent Locations
Recent Replies