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0 votes
0 replies
548 views
MG-RAST KEGG KO Search
mg-rast kegg metagenomics ko
written by Jeremy 94
0 votes
3 replies
1.3K views
Demonstrating lack of difference between two peaksets
diffbind chip-seq
updated by LauferVA 497 • | written by Aspire 43
0 votes
6 replies
2.0K views
biological meaning /summary for similar sets of GO terms
annotation go
updated by Istvan Albert 10K • | written by lessismore 144
2 votes
2 replies
2.1K views
What is the meaning of miniasm -2S6 command?
oxford-nanopore miniasm assembly
updated by Ram 4.5K • | written by traditionalGuy 6
0 votes
5 replies
1.7K views
Same NCBI IDs for different Ensembl IDs / Multiple NCBI IDs for an Ensembl ID
kegg entrez ensembl
written by Maxwell 7
0 votes
9 replies
2.4K views
Python3 or Ubuntu, not perl: Have Primers with Degenerate Bases, Need tool or way to List all Possible Nucleotide Sequences
degenerate-bases python primers biopython
updated by Dave Carlson 223 • | written by Matthew 0
0 votes
4 replies
1.6K views
Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
illumina rna-seq paired-end
updated by i.sudbery 2.3K • | written by mathavanbioinfo 8
0 votes
0 replies
626 views
MIRA runs yielding different assemblies with same input data and parameters
mira replication denovo assembly
written by btc347 0
0 votes
1 reply
835 views
Understanding Uncommon Genotype Formats in VCF Files Generated by nf-core RNAvar Pipeline
genotype rnaseq
updated by Pierre Lindenbaum 17K • | written by ASid 4
0 votes
2 replies
2.0K views
Seurat: CreateSeuratObject error, please help
seruat
written by mnx0723 0
0 votes
2 replies
2.3K views
ggplot2 installation
ggplot2
updated by rpolicastro 1.3K • | written by safeassli 1
0 votes
1 reply
844 views
How to perform enrichment p-value for a motif
enrichment statistics
updated by Trivas 191 • | written by Apex92 32
0 votes
3 replies
1.4K views
Corset error reading input files
corset
updated by Ram 4.5K • | written by scarey 0
0 votes
5 replies
1.1K views
Merging bam files from different runs
samtools bam
updated by GenoMax 16K • | written by shpak.max 8
0 votes
0 replies
425 views
edgeR paired analysis with three conditions
edger
written by suraj 0
3 votes
0 replies
1.0K views
Herald: The Biostar Herald for Monday, March 11, 2024
herald
written by Biostar 380
0 votes
5 replies
2.1K views
Bedtools getfasta: error
getfasta bedtools
updated by GenoMax 16K • | written by ummeswaiba 0
0 votes
2 replies
1.2K views
RNA-seq DE with AAV injection
aav rna-seq edger enrichment
updated by rpolicastro 1.3K • | written by CriticalP 0
0 votes
1 reply
1.2K views
DMRcate for sequencing data
dmrcate dna-methylation differential-methylation
updated by Basti 210 • | written by alejandrarodrigu21 0
0 votes
0 replies
759 views
How can I conduct a meta-analysis of RNA-seq or microarray data?
r rna-seq microarray meta-analysis
written by wyt1995 4
0 votes
2 replies
1.6K views
Query Name too long - samtools
samtools
updated by GenoMax 16K • | written by marco.barr 22
0 votes
0 replies
607 views
News: Online course: Genome Assembly and Annotation - 3 seats left
genome-assembly galaxy genome-annotation
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
662 views
Computing the neighborhood graph in single cell pipeline
single-cell knn
updated by ATpoint 9.1K • | written by QX 9
0 votes
5 replies
1.9K views
Is it appropriate to publish a phylogenetic tree with low basal bootstarp value
dna tree phylogenetic
updated by Joe 2.2K • | written by zhou03091010 0
0 votes
5 replies
1.9K views
Is it necessary to sort fastq files by sequence before running variant analysis?
fastq ngs sort
updated by GenoMax 16K • | written by SlowSD 0
0 votes
1 reply
995 views
Download all phytochemicals from IMPPAT database
phytochemicals docking imppat
written by goyalsamta2609 0
0 votes
0 replies
562 views
How to extract particular gene(genbank) from mitochandrial genome lists (genbank)?
genbank
written by kuttibiotech2009 3
0 votes
1 reply
1.0K views
VEP fail to annotate NCBI refseq GFF
vep variant
written by bharata1803 58
0 votes
0 replies
636 views
Relative abundance output from qiime2
relative-abundance classification qiime2 taxon
updated by Ram 4.5K • | written by arunsaikirans 0
0 votes
2 replies
1.0K views
How to get genes in a gene set in msigdb?
msigdb
written by Chris 36
0 votes
2 replies
746 views
I am trying to generate a bcf file using samtools mpileup, is this suppose to happen?
samtools mpileup
updated by Ram 4.5K • | written by K 0
0 votes
3 replies
1.5K views
Can Metal merge two GWAS Summary data even if the versions of SNP id are different?
grch37 grch38 metal
written by qq 0
0 votes
0 replies
643 views
Differentially expressed genes across condition
singlecell
written by synat.keam 12
0 votes
4 replies
1.8K views
What are the best HW p-value & MAF cutoffs based on my study ?
maf p-value hwe
written by mona.patoughi 0
0 votes
6 replies
2.7K views
Kallisto returns 'illegal instruction' when running commands
kallisto rna-seq
updated by GenoMax 16K • | written by Eleanor 0
0 votes
0 replies
586 views
Function normalize raw microarray data for GSVA
gsva
written by Chris 36
0 votes
2 replies
1.9K views
I do not understand how to get total peaks from MACS2 shown to me. What mistake(s) am I making here?
atacseq macs
written by Ronin 1
0 votes
1 reply
1.0K views
Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files
variant-calling vcf bcftools
updated by Ram 4.5K • | written by sardana.thakur.prachi 0
1 vote
1 reply
2.7K views
Error in changing the annotation color of pheatmap
r package pheatmap
updated by fracarb8 176 • | written by applepie 1
0 votes
0 replies
694 views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
written by sina.majidian 2
0 votes
2 replies
1.0K views
How to interpret merged_calls result of command line from CNVpytor
cnvpytor
updated by GenoMax 16K • | written by Nannapat 0
0 votes
1 reply
3.0K views
Segmentation fault for cd-hit
software-error
updated by GenoMax 16K • | written by Crystal 7
0 votes
2 replies
1.4K views
How do I collapse rows of a tibble in R?
r tidyverse tibble collapse
written by BioinfGuru 214
0 votes
6 replies
2.3K views
cutadapt tool
cutadapt
updated by Brian Bushnell 2.0K • | written by Eshwari 1
0 votes
1 reply
1.2K views
Sequence Duplication Levels in targeted sequencing
fastqc pcr sequencing
updated by Brian Bushnell 2.0K • | written by Shaghayegh 2
0 votes
6 replies
2.1K views
Target deletions with adaptive sampling
microdeletions nanopore adaptivesampling
written by njornet 2
1 vote
5 replies
8.2K views
how to know what adapter sequences to trim for RNA-seq?
fastq rna-seq cutadapt
updated by Brian Bushnell 2.0K • | written by lunarskye222 1
0 votes
3 replies
2.1K views
Variant caller for Ion Torrent data
thermofisher ngs iontorrent genomics variant-calling
updated by Brian Bushnell 2.0K • | written by adarsh 8
0 votes
12 replies
3.7K views
Processing fastq files for genome assembly
fastq vcf assembly amino-acid
updated by Brian Bushnell 2.0K • | written by Neil 2
0 votes
0 replies
672 views
different protocols for rapid nanopore sequencing starting from solid tumor
solid tumor nanopore oxford sequencing
updated by GenoMax 16K • | written by LauferVA 497
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