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0 votes
1 reply
1.7K views
Calculating Species Abundance/Richness in Excel
species-abundance excel
updated by Ram Ram • written by ilsa • ilsa
0 votes
1 reply
826 views
RNAseq counts: transcript to gene
rnaseq
updated by Ram Ram • written by MAPK2 • MAPK2
0 votes
2 replies
920 views
How can I have the structure of a gene (or haplotypes of a gene) on the top of the LD plot on Haploview
ldplot haploview haplotypeblocks linkageformat
written by mona.patoughi • mona.patoughi
0 votes
7 replies
2.0K views
Snakemake rule that runs an assessment for once after completing other previous rules
snakemake
written by Fadlilah • Fadlilah
0 votes
0 replies
839 views
Job: Postdoctoral research position at the Barts Cancer Institute - Queen Mary University London
cancer epigenomics transposable-elements
updated by Ram Ram • written by Sergio Martínez Cuesta Sergio Martínez Cuesta
0 votes
4 replies
1.3K views
Can I perform a Functional Enrichment Analysis on a specific list of pre-defined genes?
rna-seq dge
written by Adam • Adam
0 votes
11 replies
3.1K views
Filtering VCF based on codon-transcript
vcf bcftools
updated by barslmn • barslmn • written by avelarbio46 • avelarbio46
0 votes
7 replies
1.7K views
PCR-cDNA sequence from MinION not alligned
minimap2 alignment cdna
written by marco.barr • marco.barr
0 votes
7 replies
2.2K views
Does vg call allow fuzzy match during SV calling?
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Maxine • Maxine
0 votes
1 reply
805 views
Mutation, MAF, CPTAC-3
cptac mutation
updated by marco.barr • marco.barr • written by Rob • Rob
0 votes
3 replies
1.6K views
Single cell RNA sequencing analysis using R
scrna-seq
updated by Ram Ram • written by fe.schiavetti • fe.schiavetti
0 votes
6 replies
1.6K views
Contamination in my FASTQC files
fastqc bowtie2
written by carlosgonzalezcruz327 • carlosgonzalezcruz327
0 votes
0 replies
1.0K views
Job: Assistant professor in Computational biology with a focus on machine learning for multimodal molecular biology data
multiomics machine-learning
written by lukas.kall • lukas.kall
0 votes
4 replies
1.3K views
Estimate cell label fitness in a clustering
single-cell cell-type
updated by LChart LChart • written by roussine • roussine
0 votes
0 replies
782 views
Calculate PSI values for pre-called splicing events in GFF from new fastq files
alternative spladder psi splicing
written by sckinta sckinta
1 vote
2 replies
3.6K views
Filter out doublet and Clustering
single-cell
updated by jv jv • written by synat.keam • synat.keam
0 votes
9 replies
2.5K views
Max length reads from fastq
fastq
updated by Michael Dondrup Michael Dondrup • written by marco.barr • marco.barr
2 votes
34 replies
22K views
Issues installing bcl2fastq?
bcl2fastq demultiplexing
updated by barslmn • barslmn • written by a.rex a.rex
0 votes
0 replies
942 views
Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
written by Nicolas Rosewick Nicolas Rosewick
0 votes
8 replies
3.5K views
Difference between GLM and Wilcoxon rank sum test
glm rank-sum wilcoxon
written by yxwucq • yxwucq
0 votes
0 replies
515 views
A way to read both the DNA fragment and the nascent RNA
chro-seq rna transcription net-seq nascent
written by Chris • Chris
0 votes
1 reply
1.1K views
seaborn dispersion graph
graph dispersion seaborn
updated by Shred Shred • written by brunofelicianodeomena • brunofelicianodeomena
0 votes
5 replies
1.4K views
How to normalise RNA seq data from two independent experiments to the same scale.
rnaseq
updated by jv jv • written by Mo • Mo
0 votes
0 replies
579 views
Get metadat from the ICGC data portal
hg38 icgc cancer
written by elisheva elisheva
0 votes
1 reply
780 views
Pileup of mapped diploid
diploid pileup
written by Axzd • Axzd
1 vote
1 reply
870 views
Testing the effect of the salinity water on abundance estimates
salinity
updated by ATpoint ATpoint • written by Thibaut • Thibaut
0 votes
6 replies
2.2K views
How can I see probe IDs in a microarray?
r microarray probe affymetrix
written by wyt1995 • wyt1995
0 votes
1 reply
896 views
Whole genome assembly
genome-assembly
updated by Ram Ram • written by manaswiniparija3 • manaswiniparija3
0 votes
1 reply
666 views
Fish_genome_assembly
bgseq longreads oxfordnanopre hybridassembly
updated by dthorbur dthorbur • written by manaswiniparija3 • manaswiniparija3
0 votes
0 replies
736 views
Annotating Seurat samples when merging objects
single seurat cell rnaseq
written by Gerard • Gerard
1 vote
0 replies
764 views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
written by David Langenberger David Langenberger
0 votes
6 replies
2.3K views
Rooting phylogenetic trees in R using Treeio's root function: Trees don't seem to root.
r mrbayes
written by lingxue • lingxue
0 votes
4 replies
1.4K views
Differential analysis using R
dna methylation
updated by Michael Dondrup Michael Dondrup • written by maryak • maryak
0 votes
1 reply
810 views
How to determine if a somatic mutation alters transcription factor binding site?
cancer motif tfbs somatic-mutation
updated by Ram Ram • written by ConvolutedGenome • ConvolutedGenome
0 votes
1 reply
874 views
Protein protein interaction network
interaction protein network
updated by dthorbur dthorbur • written by Tomk • Tomk
0 votes
7 replies
1.7K views
Error "ckalloc: request for negative space" about multiz
multiz
written by marh32 • marh32
0 votes
3 replies
1.6K views
How to analyze DEGs in scRNA-seq data?
deg single-cell scrna-seq rna-seq
updated by Ram Ram • written by kayah • kayah
2 votes
4 replies
3.3K views
How to call mitochondrial SNP?
snp mitochondrial
updated by Ram Ram • written by hxlei613 hxlei613
0 votes
2 replies
1.8K views
GATK's new best practice for mitochondrial variant calling
snp sequencing
updated by sriram_pharm • sriram_pharm • written by lovelysunzt • lovelysunzt
0 votes
2 replies
1.4K views
scRNAseq output generated using STARsolo has gene_id rather than gene_name
starsolo rnaseq seurat single-cell
written by Lauren • Lauren
0 votes
0 replies
514 views
Help plotting enrichment results - kegg terms
enrichment-analysis kegg
updated by Ram Ram • written by DByter • DByter
0 votes
0 replies
533 views
DWGSIM incorrectly mapped reads
dwgsim rna-seq mapping transcriptomics
written by cst_rmrz • cst_rmrz
0 votes
6 replies
2.1K views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
written by jared.andrews07 jared.andrews07
0 votes
8 replies
2.7K views
Finding insert sequences using long reads
insert-sequences nanopore long-read-assembly
updated by Anand Rao Anand Rao • written by bvm • bvm
0 votes
2 replies
5.1K views
Align dorado output to reference
minimap2 bam nanopore dorado
updated by colindaven colindaven • written by njornet • njornet
0 votes
6 replies
1.9K views
Odd behaviour - NCBI Eutils
ncbi eutils esearch eutilities efetch
updated by GenoMax GenoMax • written by npb27 • npb27
0 votes
2 replies
1.1K views
DiffBind issue in identification of differentially enriched peaks between two conditions
diffbind chip-seq
written by accibio • accibio
0 votes
1 reply
814 views
News: Integrated Genome Browser (IGB) Office Hours
integrated-genome-browser igb
updated by Ram Ram • written by IGB Helper • IGB Helper
0 votes
0 replies
410 views
Reactome isChimeric attribute
reactome
written by Ana • Ana
0 votes
5 replies
1.7K views
loop string set
python stringset
updated by rpolicastro rpolicastro • written by aj123 aj123
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