Computing the neighborhood graph in single cell pipeline
Hi all,
In the single-cell analysis, there is a step called "Computing the neighborhood graph". Can anyone explain why we need to perform this step and why is it computed on a reduced dimensional space?
Also, can anyone have the code to perform the computation for this step that would like to share?
Best,
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https://bioconductor.org/books/release/OSCA/ please go through that