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How to find gene ids for Pfam ids?

How to get gene ids for Pfam ids? For a long list of Pfam ids from Arabidopsis thaliana.

Any tool available?

pfam gene
• 1,523 views • link
written by WUSCHEL WUSCHEL

2 answers

Proteome page for Arabidopsis from UniProt: https://www.uniprot.org/uniprotkb?query=proteome:UP000006548

Click on Customize columns --> External Resources --> Families and Domains --> Pfam. Customize anything else you need. Download the entire table. Parse as needed.

• 0 views • link
written by GenoMax GenoMax

This is fantastic. Thanks a heap.

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written by WUSCHEL WUSCHEL

If you're using ensmebl gene IDs, you can use BioMart to download a table with those details. You can also run the sequences through InterProScan.

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written by dthorbur dthorbur

Thank you. I donot have ensmebl ids.

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written by WUSCHEL WUSCHEL

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