Transcription Factor (TF) sequence extraction +/- 2000 of Arabidopsis thaliana

I have Arabidopsis thaliana transcription factors and I want to extract sequence +/- 2000. Is there any tool OR way to extract quickly?

Kindly tell me the tool name or any website.

I tried different databases of Arabidopsis thaliana.

next-gen genome gene r

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updated 3.8 years ago by Ram

• written 11.0 years ago by alpha09 •

I have Arabidopsis thaliana transcription factors.

In which form do you have them? Do you have list of names? Coordinates? Motifs?

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updated 3.8 years ago by Ram

• written 11.0 years ago by GouthamAtla

Yes I have names and motif.

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updated 3.8 years ago by Ram

• written 11.0 years ago by alpha09 •

1 answer

You can find the resource you need using the upstream/downstream sequence tool using TAIR IDs (https://www.arabidopsis.org/tools/bulk/sequences/index.jsp). Same thing using the Phytozome BioMart (which is probably accessible in R)

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updated 3.8 years ago by Ram

• written 11.0 years ago by UnivStudent

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