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0 votes
9 replies
2.7K views
Tool: A python library for reading and writing sequences in fasta and fastq format.
seqio
updated by Istvan Albert 10K • | written by dwpeng 14
1 vote
5 replies
860 views
Forum: Advice for transitioning from a Life Sciences Education degree to Bioinformatics
life bioinformatics sciences masters education
updated by Bharat K. C. Patel 11 • | written by mireader11 1
0 votes
1 reply
1.0K views
fgbio read structure
fgbio umi extractumisfrombam
updated by farha 0 • | written by MH85 2
0 votes
2 replies
332 views
Extracting individual chromosomes from a .gfa graph
xg vg gfa chunk
written by samuel.michel 0
2 votes
1 reply
198 views
Tool: 17 pre-configured pixi environments for microbial genomics — built by a biologist, not a developer
installation reproducibility pixi genomics snakemake
written by Bharat K. C. Patel 11
1 vote
1 reply
435 views
Job: Bioinformatics Programmer I ( Genomic Medicine) Houston, TX, United States
bioinformatics python medicine pipelines ngs
updated by Ram 4.5K • | written by bioinformatics 1
1 vote
0 replies
172 views
Tutorial: Running spaceranger segment for Visium HD QC on Windows (WSL2) — workflow + QuPath script
wsl2 qupath spaceranger 10x-genmoics windows
updated by lauraashaley 1 • | written by Jing-Yuan 1
2 votes
1 reply
104 views
Global changes in TE expression, how to normalize?
deseq2
updated by lauraashaley 1 • | written by Michael Love 262
0 votes
1 reply
188 views
Test data for benchmarking a pipeline
nextflow isolate pipeline metagenomics wgs
updated by GenoMax 16K • | written by zizigolu 438
2 votes
1 reply
92 views
News: Boost your data analysis skills – Discover the Physalia May courses
bioinformatics rnaseq gwas genomics statistics
updated by lauraashaley 1 • | written by Physalia-courses 281
1 vote
3 replies
438 views
Liftoff feature mapping
annotation liftoff
updated by lauraashaley 1 • | written by Christopher 1
1 vote
2 replies
1.6K views
Demultiplex PacBio CCS reads on Mac
pacbio demultiplex next-gen sequencing
updated by lauraashaley 1 • | written by manthony5955 1
1 vote
5 replies
527 views
How should I define output for a Nextflow demultiplexing rule?
hifi lima demultiplexing nextflow
written by sholt6 3
1 vote
9 replies
912 views
How to interpret segmental duplications in UCSC browser?
duplications browser ucsc
updated by lauraashaley 1 • | written by _quantum_girl_ 8
5 votes
5 replies
544 views
Forum: AI era of the forum
ia
updated by lauraashaley 1 • | written by Juke34 949
4 votes
1 reply
150 views
Tool: vareffect — a Rust-based variant effect predictor that replaces VEP
rust vcf hgvs variant-annotation vep
updated by lauraashaley 1 • | written by LIA Genomics 4
1 vote
2 replies
257 views
gene-expression data from RNA-seq
gene-expression rna-seq
updated by i.sudbery 2.3K • | written by yana 1
1 vote
3 replies
2.0K views
Nextflow crash on AWS Batch with transition error
bwa nextflow aws
updated by lauraashaley 1 • | written by hkarakurt 21
1 vote
16 replies
3.8K views
The Best Cloud Solution For Genomics
workflow data-sharing paas genomics cloud
updated by lauraashaley 1 • | written by davidmaimoun 6
3 votes
1 reply
147 views
Tool: PERREO: An integrated pipeline for repetitive elements analysis enables the repeatome expression profiling in cancer
repeatome bioinformatics rna-seq
updated by lauraashaley 1 • | written by frarodmar17 4
1 vote
1 reply
173 views
News: (Online course) Agentic AI for Life Sciences
genomics ai agenticai
updated by lauraashaley 1 • | written by Physalia-courses 281
1 vote
3 replies
816 views
CIBERSORTx analysis
seq cibersortx scrna
updated by HEMANT 0 • | written by yadavsoumya647 2
13 votes
28 replies
14K views
How Much Does It Cost To Align A Flowcell In The Cloud?
cloud
updated by Antonio R. Franco 519 • | written by Jeremy Leipzig 2.3K
0 votes
1 reply
1.1K views
Azure vs AWS for cloud computing with Kraken2?
aws azure metagenomics kraken2
updated by Nishika 0 • | written by Natalia 0
0 votes
18 replies
2.3K views
NCBI Genomes submission - what to do if FCS report is incorrect? Stuck with nowhere to go!! No communication!
ncbi submissions genomes
updated by MirianT_NCBI 83 • | written by susan.klein 3
0 votes
0 replies
90 views
Tool: FAIRMD Lipids Databank web-portal, seeking feedback
data molecular-dynamics membranes lipids bilayer
written by Michael Dondrup 5.6K
7 votes
17 replies
9.6K views
Do I Have A Chance To Hire A Bioinformatics Freelancer?
freelance
updated by Michael Dondrup 5.6K • | written by Pawel Szczesny 323
0 votes
1 reply
315 views
Can PC1 (eigengenes) from different gene sets be compared in WGCNA/hdWGCNA?
hdwgcna eigengene module wgcna
updated by andres.firrincieli 412 • | written by Shriyansh 0
1 vote
4 replies
3.5K views
Tool for extracting part of aligned sequence by CIGAR string
cigar sam bam extract alignment
updated by Marek 10 • | written by Charles-Alexandre Roy 9
5 votes
14 replies
1.7K views
Tool: RustQC: 60x speedup in RNA-seq quality control steps
rustqc nf-core
updated by jared.andrews07 1.9K • | written by Phil Ewels 160
0 votes
0 replies
80 views
Peptidomics Quality Control
peptidomics control quality proteomics ms
written by fnepo 4
0 votes
0 replies
87 views
Merging Serial Matrix file with 1240k AADR data set.
aadr
updated by GenoMax 16K • | written by avirmed006 0
0 votes
0 replies
73 views
WOMBAT for multitrait GWAS analysis
gwas multitrait wombat
written by Bushra Bibi 8
1 vote
15 replies
7.7K views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
updated by i.sudbery 2.3K • | written by Lluís R. 124
0 votes
10 replies
8.9K views
Using AWS for Bioinformatics
unix cluster
updated by Nishika 0 • | written by dk0319 7
0 votes
4 replies
541 views
Problem trimming SAM file to use with assembler
fastq sam assembly
updated by GenoMax 16K • | written by Emilio 0
0 votes
2 replies
336 views
Issue when using design matrix taking batch effect into account - EdgeR RNA-seq
rna-seq edger design-matrix
updated by Ram 4.5K • | written by maxime 0
0 votes
5 replies
559 views
Liftover from one yeast species into another one fails
vcf chain chainfile liftover gatk
updated by GenoMax 16K • | written by Iseez 0
0 votes
0 replies
105 views
News: Workshop: Virtual Genome Annotation, May 19-21, 2026
genomeannotation workshop uconn
written by zsc25001 1
0 votes
0 replies
295 views
Job: Founding Computational Biologist, AI Agents for Pharma
bioinformatics discovery llm drug pharma
updated by colindaven 844 • | written by iollo Hiring Team 0
0 votes
7 replies
798 views
How to merge SNP datasets aligned to different reference genome versions without re-calling variants?
genome-assembly vcf snp variant-calling liftover
written by jhonatan.henrique 4
0 votes
0 replies
106 views
Tool: Advit: An automated, cross-platform pipeline for Kraken2/Bracken classification and Krona visualization
kraken metagenomics
written by Rounak 0
0 votes
0 replies
72 views
News: Workshop:Virtual Genome Assembly, April 21-23, 2026
virtual genomeassembly workshop uconn
written by zsc25001 1
1 vote
1 reply
369 views
News: Conference on environmental sustainability in research computing, in Geneva, Switzerland from 4th--8th May 2026
database r statistics
written by rakhi 1
1 vote
3 replies
491 views
Bacterial community profiling using 16S rRNA nanopore sequencing
nanopore full-length microbiome emu 16s-rrna
updated by michael.ante 408 • | written by Cedrick 1
1 vote
0 replies
165 views
Statistical test for proportion values.
deconvolution cibersortx bayesprism
written by yadavsoumya647 2
0 votes
1 reply
347 views
IsoformSwitchAnalyzeR ( Isoform switch )
isoformswitchanalyzer
updated by i.sudbery 2.3K • | written by bendakiiracha17 0
1 vote
4 replies
5.7K views
Isoform Differential Expression Analysis
rna-seq rsem deseq2 ebseq
updated by bendakiiracha17 0 • | written by john 6
0 votes
1 reply
207 views
Interactions in DESeq2
deseq2
updated by swbarnes2 1.5K • | written by brooke.bell1299 0
0 votes
3 replies
532 views
Working with duplicates of sample for my DESeq2
deseq2 transcriptomic analysis
written by Ananya 0
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