This is a test version of Biostars. For the public version, visit https://www.biostars.org.
6 votes
6 replies
3.0K views
Forum: GPU-enabled bioinformatics
gpu
updated by lestdnks • lestdnks • written by Dave Carlson Dave Carlson
2 votes
1 reply
1.9K views
Tutorial: Fast SCENIC GRN Analysis with RegDiffusion
grn network scrna-seq wgcna
updated by lestdnks • lestdnks • written by Hao • Hao
0 votes
4 replies
527 views
RNA-seq - in-silico averaging of samples, comparison to true pooling
deseq2 pooling rna-seq
updated by swbarnes2 swbarnes2 • written by boczniak767 boczniak767
0 votes
0 replies
131 views
Deeptools ComputeMatrix returns 0 values for clearly populated regions
deeptools
updated by GenoMax GenoMax • written by eglsidlauskaite • eglsidlauskaite
0 votes
4 replies
401 views
Ideal human immune sequence sets for generating blastp database
blast immune protein blastp
written by Alex Reynolds Alex Reynolds
0 votes
0 replies
315 views
Job: Doctoral student in Computational Genomics, Gothenburg, Sweden
snp evolution genome machine-learning
written by sina.majidian • sina.majidian
0 votes
2 replies
335 views
combat-Seq error
combat-seq r
updated by ATpoint ATpoint • written by pinheirofabiano • pinheirofabiano
0 votes
1 reply
418 views
Recommendations of tools for segmentation of 10x Xenium data in human brain
xenium spatial-transcriptomics imaging single-cell
updated by Bastien Hervé Bastien Hervé • written by yura.grabovska • yura.grabovska
0 votes
0 replies
236 views
News: AI-Powered Python for Bioinformatics (Online course) - 1–2 July
python ai programming
written by Physalia-courses Physalia-courses
0 votes
3 replies
642 views
How do I extract specific read sequences from an SRA run file, based on taxonomy?
virus taxonomy illumina ncbi sequencing
updated by GenoMax GenoMax • written by ggio • ggio
0 votes
2 replies
349 views
Matching gene names in .gct file and .gmt file in GSEA
gsea
written by adithigr30 • adithigr30
0 votes
2 replies
1.7K views
Unable to use rtracklayer import of bigwig files in older chipseq pipeline - work around/alternatives?
bioconductor rtracklayer chipseq lily
updated by Yohan • Yohan • written by awsk • awsk
0 votes
9 replies
5.2K views
Forum: SQL-why do we need it in Bioinformatics ?
sql programming
updated by Jeremy Leipzig Jeremy Leipzig • written by iibrams07 • iibrams07
2 votes
0 replies
292 views
Tool: PantheonOS: An Evolvable Multi-Agent Framework for Automatic Genomics Discovery
agent genomics singlecell ai
written by Weize • Weize
0 votes
0 replies
95 views
ERROR in parsing gene gapmm2_4
funannotate2
updated by GenoMax GenoMax • written by Iruj • Iruj
0 votes
1 reply
345 views
VCF files from mtDNA-Server2
mtdna mtdna-server2 vcf
updated by Arup Ghosh Arup Ghosh • written by 4527494 • 4527494
0 votes
0 replies
367 views
Job: Assistant Professor Positions (2) in Omics Sciences and Biological Data Science
bioinformatics proteomics metabolomics genomics programming
written by Satyajeet Khare Satyajeet Khare
0 votes
1 reply
1.3K views
Error plotting the markers in sc.pl.rank_genes_groups_dotplot
scanpy trasncriptome seurat spatial
updated by Bastien Hervé Bastien Hervé • written by Omics data mining Omics data mining
0 votes
4 replies
528 views
How to use scrublet for samples containing hashtags?
scrublet single-cell scrnaseq
updated by jaro.slamecka jaro.slamecka • written by bioinfo • bioinfo
0 votes
0 replies
343 views
AlphaGenome: batch_variant_scoring : what is the best SNP of interest ?
variant alphagenome
written by Pierre Lindenbaum Pierre Lindenbaum
0 votes
1 reply
307 views
High Ts/Tv ratio for bacterial genome
bacteria snp
updated by Joe Joe • written by yesquokkan • yesquokkan
0 votes
3 replies
381 views
Aligning a bam file
fastq bam minimap2 dorado basecalling
updated by GenoMax GenoMax • written by zizigolu zizigolu
0 votes
4 replies
468 views
Which one i should use for BLAST?
blast bacteria identification
updated by GenoMax GenoMax • written by Vishy001 • Vishy001
2 votes
4 replies
1.2K views
Tutorial: Running DeepVariant natively on macOS Apple Silicon (M1/M2/M3/M4) with Metal GPU acceleration
apple-silicon metal-gpu macos variant-calling deepvariant
written by antoniolamb • antoniolamb
0 votes
3 replies
575 views
Help with scanpy batch correction
scanpy
updated by ATpoint ATpoint • written by bioinfo • bioinfo
0 votes
0 replies
166 views
News: Advanced Python for Data Science and Bioinformatics (Online Course - 23–26 March)
datavisualisation programming machinelearning python
written by Physalia-courses Physalia-courses
0 votes
3 replies
502 views
combat-seq: group variable
combat-seq
updated by ATpoint ATpoint • written by pinheirofabiano • pinheirofabiano
0 votes
0 replies
164 views
News: Python for Data Science and Statistical Computing
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
154 views
VCFtools for tetraploids
plants vcftools tetraploids
written by irene • irene
0 votes
0 replies
395 views
News: Online courses on Spatial Omics and Spatial Transcriptomics
spatialomics spatialtranscriptomics bioconductor
written by Physalia-courses Physalia-courses
0 votes
2 replies
440 views
PROVEAN usage
provean
written by yesquokkan • yesquokkan
0 votes
6 replies
846 views
polyA imapct on downstrem alaysis particularly alternative splicing
adapter alternative-splicing polya trimmomatic rna-seq
updated by Ram Ram • written by mahsa80.mm • mahsa80.mm
0 votes
0 replies
500 views
News: Call for Short Papers - CIBB 2026 (AI & Computational Intelligence for Bioinformatics and Biostatistics), Rome, Sept 2-4
bioinformatics machine-learning artificial-intelligence genomics biostatistics
written by Umberto • Umberto
0 votes
4 replies
822 views
gsea ranking genes
gsea rnaseq
updated by DareDevil DareDevil • written by larifi.nour2 • larifi.nour2
0 votes
2 replies
534 views
LM in R: One way anova, Linear regression and T-test
anova t-test linear-regression
updated by Ram Ram • written by MS • MS
0 votes
0 replies
218 views
News: Advanced Python for Biologists
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
1 vote
0 replies
189 views
News: Single-Cell RNA-Seq Analysis
scrna-seq
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
1 vote
1 reply
318 views
DEA best practices: raw vs. normalized data
scanpy scrna-seq deg
updated by ATpoint ATpoint • written by npont • npont
0 votes
6 replies
769 views
scRNA - seq dataset integration
seurat seq integration scrna
written by yadavsoumya647 • yadavsoumya647
0 votes
1 reply
2.9K views
seurat: Average expression function and find markers DE fold changes do not add up
seurat single-cell
updated by hello_bioinfo • hello_bioinfo • written by rasing02 • rasing02
0 votes
0 replies
171 views
Seurat - integration of metastases biopsies
seurat scrnaseq snrnaseq integration
written by txema.heredia • txema.heredia
0 votes
0 replies
158 views
News: (Online course) Multivariate Data Analysis with R and vegan, 4–7 May
multivariateanalysis statistics vegan r
written by Physalia-courses Physalia-courses
0 votes
2 replies
465 views
vg surject get unbalanced pair end result
vg
updated by GenoMax GenoMax • written by gulin • gulin
0 votes
5 replies
7.1K views
Any implementation of the edgeR in python
rna-seq next-gen sequencing normalization
updated by Lior Pachter Lior Pachter • written by Hamid • Hamid
0 votes
0 replies
166 views
Understanding vg filter nodes output in terms of forward and reverse compliment strand origin
vg filter
written by cassiwatt • cassiwatt
0 votes
2 replies
415 views
Funannotate annotation help
annotation genome
updated by SomeOne • SomeOne • written by Drew • Drew
0 votes
1 reply
348 views
News: LAST CALL: Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 23-25, 2026 in Berlin)
scrnaseq berlin singlecell ngs
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
2 replies
430 views
scRNAseq datasets integration issue
data scrnaseq integration
updated by Bastien Hervé Bastien Hervé • written by JackShao • JackShao
0 votes
0 replies
147 views
Is there a significance between 2 correlations of H3K36me3/PolII in genebody
cutandrun correlation statistics
written by theodore theodore
2 votes
9 replies
1.5K views
GLnexus import issues with 4764 samples, WGS
glnexus
updated by Jeremy Leipzig Jeremy Leipzig • written by Claire Weber • Claire Weber
Recent Votes
Recent Locations
Recent Replies