Hello everyone, I am developing a Nextflow pipeline that processes data from raw FASTQ files through to downstream analysis for both whole genome sequencing (isolate data) and shotgun metagenomics. For publication and reproducibility, I am looking for publicly available test datasets (preferably small to moderate size) that include:

Paired-end short reads WGS isolate data

Shotgun metagenomic sequencing data

The organism is not critical, but the data should be well-documented and suitable for benchmarking a full pipeline. I would appreciate any recommendations for reliable sources (e.g., specific studies, accession numbers, or curated benchmark datasets). Many thanks in advance.