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mikhail.shugay
mikhail.shugay
Role:
Moderator
Reputation:
3,480
Joined:
13.2 years ago
Last seen:
7.5 years ago
Location:
Czech Republic, Brno, CEITEC
Google Scholar:
OtStpYgAAAAJ
Twitter:
@antigenomics

Bioinformatician/software developer. Currently I focus on developing software for processing and analysis of T- and B-cell receptor repertoire data (aka Rep-Seq). I'm also a big fan of unique molecular identifier (UMI) technology, i.e. tagging individual DNA and cDNA molecules (and even entire cell genomes) with short degenerate nucleotide tags to track them in high-throughput sequencing experiments.

Latest posts by user
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Comment: C: MAGERI: a software tool for calling rare variants and detecting circulating tumo
written by mikhail.shugay mikhail.shugay
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Answer: A: Modeling paratope and epitope interaction
written by mikhail.shugay mikhail.shugay
3 votes
7 replies
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Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare-variant resequencing umi ctdna
updated by blid11 • blid11 • written by mikhail.shugay mikhail.shugay
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Comment: C: Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
written by mikhail.shugay mikhail.shugay
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Comment: C: Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
written by mikhail.shugay mikhail.shugay
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Answer: C: How to convincingly illustrate and discuss negative results in NGS.
written by mikhail.shugay mikhail.shugay
1 vote
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Answer: A: Making a data table more comprehensive
written by mikhail.shugay mikhail.shugay
5 votes
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Answer: A: Why can't we downvote on this forum?
written by mikhail.shugay mikhail.shugay
3 votes
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Answer: A: Adaptive T cell receptor productive clone missing
written by mikhail.shugay mikhail.shugay
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Comment: C: Visualize Gene Fusions
written by mikhail.shugay mikhail.shugay
3 votes
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Answer: A: TCR RNAseq Single Cell Data Analysis
written by mikhail.shugay mikhail.shugay
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Comment: C: Gene Fusion Detection: Rna-Seq Data
written by mikhail.shugay mikhail.shugay
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Answer: A: TCR Sequencing Lack of Repertoire Overlap
written by mikhail.shugay mikhail.shugay
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Comment: C: T-Cell Receptor Sequencing Clonotype Information
written by mikhail.shugay mikhail.shugay
1 vote
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Answer: A: Cancer TCR Repertoire Datasets
written by mikhail.shugay mikhail.shugay
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Answer: A: DAVID tool query
written by mikhail.shugay mikhail.shugay
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Comment: C: Where can I find targeted sequencing data
written by mikhail.shugay mikhail.shugay
1 vote
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Answer: A: What is the reason for most software errors in Bioinformatics according to you?
written by mikhail.shugay mikhail.shugay
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Answer: A: Identifying genes from contigs (obtained from transcriptome of a fungi)
written by mikhail.shugay mikhail.shugay
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1 reply
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Comment: C: Meta: Markdown in Biostars (now enabled)
written by mikhail.shugay mikhail.shugay
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