Modeling paratope and epitope interaction
What bioinformatics programs can I use to model paratope and epitope interactions using protein sequences and known structure models of the antibody and antigen?
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mikhail.shugay
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Mac •
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Have you looked at the pipeline suggested at IEDB: http://tools.iedb.org/main/bcell/modeling-docking/? The Web servers for modeling 3D structure of antibody-protein complexes seems to be what you need, or at least can serve as a starting point.
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