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0 votes
0 replies
624 views
Cell-Cycle Variation in 10x Multiomics
seurat multiome 10x single-cell
updated by Ram Ram • written by georgii.vdovin • georgii.vdovin
1 vote
4 replies
1.3K views
Percentage Problem
gene alignment
updated by jared.andrews07 jared.andrews07 • written by parb2182 • parb2182
0 votes
1 reply
2.4K views
rMATS-turbo build_rmats --conda issue: Run 'conda init' before 'conda activate'
conda rmats-turbo rmats
updated by GenoMax GenoMax • written by Angelos • Angelos
0 votes
2 replies
1.4K views
Cannot access taxdb in local blast search
taxonomy taxdb blastn
written by Luca Arbore • Luca Arbore
0 votes
0 replies
808 views
Should I focus on genes with MGI symbols when they have several Ensembl/Entrez IDs?
biomart entrez mgi ensembl ncbi
written by ev97 • ev97
0 votes
1 reply
1.0K views
URL query parameters in JBrowse2
jbrowse2
written by alslonik alslonik
0 votes
0 replies
604 views
Transcriptome vs genome reference in gene expression analysis
gene-expression rna-seq transcriptome genome snv
written by bioinfo1994 • bioinfo1994
0 votes
3 replies
1.3K views
Snakemake rule to copy files
snakemake
updated by raphael.B • raphael.B • written by DBScan • DBScan
0 votes
0 replies
739 views
Calculation of RPM and deduplication
normalization metagenomics rpm deduplication
written by Luca Arbore • Luca Arbore
0 votes
3 replies
1.0K views
RNA seq data analysis
rna-seq
updated by pinheirofabiano • pinheirofabiano • written by mohamadhosein.shams1381 • mohamadhosein.shams1381
3 votes
0 replies
1.2K views
Job: PhD in (epi)genomics/bioinformatics
forensics repetitive-dna epigenetics phd nanopore-sequencing
updated by Ram Ram • written by Athina Vidaki • Athina Vidaki
0 votes
3 replies
1.0K views
Error while doing trimmomatic
trimmomatic
updated by Ram Ram • written by dr.deepakkukkar • dr.deepakkukkar
1 vote
3 replies
3.2K views
Forum: leetcode for bioinformatics?
leetcode
updated by Matthias Zepper Matthias Zepper • written by microfuge microfuge
0 votes
3 replies
1.0K views
Open question: What's the best way to share an R environement?
r environement conda reproductibility
updated by ATpoint ATpoint • written by Ondina • Ondina
0 votes
0 replies
629 views
Blog: Revolutionizing Rare Disease Research with Long-read Sequencing
diseases rare complex wgs
written by Novogene • Novogene
0 votes
0 replies
694 views
Blog: Where to Get Genotyping Data/GWAS Data
gwas genotyping
updated by GenoMax GenoMax • written by Novogene • Novogene
0 votes
2 replies
1.5K views
Is it possible to have a mitochondrial genome of size 30-40kbp in insects?
mitochondria genome assembly
written by Meeran • Meeran
0 votes
3 replies
1.6K views
Where to find full operon annotations of E coli
gtf annotation gff bed
updated by massa.kassa.sc3na massa.kassa.sc3na • written by noodle noodle
0 votes
3 replies
1.0K views
Detection of chimeric HIV-Host transcripts
single-end hiv chimeric-transcripts
updated by Ram Ram • written by Mrist01 • Mrist01
0 votes
2 replies
1.0K views
Normalizing a fold change matrix
chip-seq change fold clustering merip-seq
written by Guy Shan • Guy Shan
0 votes
0 replies
490 views
Problem evaluating chewBBACA schema
schema chewbbaca
written by blur blur
0 votes
6 replies
2.7K views
bam is in a format that cannot be usefully indexed
mapping bam index star
written by Kelly • Kelly
0 votes
3 replies
4.5K views
What software is a good standalone alternative to the Prokka genome annotation software?
annotation-software prokka
updated by GenoMax GenoMax • written by bioinformatics_bel • bioinformatics_bel
1 vote
3 replies
2.7K views
LD SNP pruning with plink
ld-pruning plink
written by celia • celia
0 votes
2 replies
918 views
Merging Bismark BED files by loci ?
methylation rrbs transposon bismark
written by anhnguyenbahoang • anhnguyenbahoang
0 votes
2 replies
3.9K views
How to Read .CEL files in R-studio?
r cel affymetrix geo
updated by Ram Ram • written by clara-28 • clara-28
0 votes
6 replies
2.0K views
input for gatk VariantAnnotator --dbsnp
variantannotator gatk
updated by GenoMax GenoMax • written by QX • QX
0 votes
3 replies
1.3K views
Defining the formula/contrasts to detect DEGs between pre vs post treatment
deseq limma
written by Dahham • Dahham
0 votes
5 replies
1.4K views
Normalizacion RNASeq Doubts
normalization bacteria featurecounts rna-seq
updated by Ram Ram • written by Julián • Julián
0 votes
3 replies
3.0K views
How to Plot Heatmap for Lower Triangular Matrix Using R
r heatmap
updated by Matthias Zepper Matthias Zepper • written by ruth • ruth
0 votes
0 replies
615 views
Squire Pipeline for TE analysis
squire
updated by colindaven colindaven • written by Bioinformatics_16 • Bioinformatics_16
0 votes
5 replies
1.7K views
STAR alignment - high % of reads mapped to multiple loci
star fastqc
updated by Ram Ram • written by sophie • sophie
0 votes
1 reply
673 views
Transposable detections for long reads
transposable-elements tetyper
updated by GenoMax GenoMax • written by Rika • Rika
0 votes
0 replies
622 views
parseCSQToGRanges in VariantAnnotation
bioconductor
written by ramiro.barrantes • ramiro.barrantes
0 votes
1 reply
1.1K views
Data Table for MONDO, DOID, UBERON and Cell Ontology
ontology doid cell mondo uberon
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Shicheng Guo Shicheng Guo
0 votes
0 replies
673 views
How do I infer the proportion of aneuploid cells using sequencing data?
purecn copynumber next-gen cnvkit wgs
written by Actinidia • Actinidia
0 votes
0 replies
578 views
GATK BwaSpark parameter optimisation
parallel-computing gatk bwaspark
updated by Ram Ram • written by Joshua • Joshua
0 votes
4 replies
1.2K views
Doubt regarding Nanomolar calculation for dsDNA
illumina nanomolar
written by alenew.am • alenew.am
0 votes
2 replies
1.1K views
how to perform the GSEA for multi groups
gsea
written by alwayshope • alwayshope
0 votes
2 replies
1.2K views
kb count -x parameter - what are the three parts?
kb_python umi cell-barcodes kallisto
updated by Assa Yeroslaviz Assa Yeroslaviz • written by gogeni5529 • gogeni5529
0 votes
5 replies
1.4K views
Suggestions for resource for running R training
r environments training
updated by Wayne Wayne • written by yura.grabovska • yura.grabovska
0 votes
2 replies
914 views
Small RNA Seq Data-Removing Adapters- Illumina GA2 instrument
sequencing
written by jspe • jspe
0 votes
1 reply
876 views
computeMatrix on 2 regions with replicates
deeptools chip-seq computematrix
updated by rfran010 • rfran010 • written by asmariyaz23 • asmariyaz23
0 votes
0 replies
498 views
Can I use CEMiTool to analyze single cell RNA seq data?
cemitool single-cell
updated by Ram Ram • written by Menna • Menna
0 votes
2 replies
1.4K views
Filter our reads from multiple hosts
genome metagenome virus host
written by Luca Arbore • Luca Arbore
0 votes
0 replies
717 views
Issue with AMR gene identification using tools like CARD (RGI), abricate, Patric, ariba, amrfinderplus.
resistant-gene
updated by Ram Ram • written by sharmatina189059 • sharmatina189059
1 vote
2 replies
897 views
which data type I can use to bulid machine learning.
machine-learning fpkm log2foldchange
written by Qiang • Qiang
0 votes
0 replies
824 views
Accessing PubMed Central full-texts via FTP?
pmcid epmc_ftxt pmc europepmc
written by jeremy.clark • jeremy.clark
0 votes
0 replies
699 views
Navigating Haplotype-Based Association Studies: Software Recommendations and Conversion Challenges
gcta shapeit gwas haplotype phasing
written by PKW • PKW
0 votes
1 reply
1.2K views
issue with kneaddata
contamination kneaddata
updated by GenoMax GenoMax • written by noorehuma • noorehuma
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