This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
1.3K views
is that statistical correct to use DEseq2 for proteomics data
proteomics deseq2
updated by ATpoint 9.1K • | written by QX 9
0 votes
0 replies
778 views
Cell Typist Providing different results between iterations
python single-cell cellannotation celltypist
updated by Ram 4.5K • | written by Manuel Sokolov Ravasqueira 12
1 vote
1 reply
1.5K views
How do I visualize variants from VCF file in IGV?
igv handbook
written by Fanta 1
0 votes
2 replies
1.3K views
How can we identify if there are neighboring genes or overlapping promoter regions within the 1000 bp upstream of the transcription start site (TSS) that we have defined?
tss tfbs
updated by Ram 4.5K • | written by Cluster 0
0 votes
0 replies
628 views
Gene-pathway network with FDR or p value
clusterprofiler
written by Chris 36
1 vote
7 replies
2.7K views
Join command for the issue
join linux
updated by Ram 4.5K • | written by Confused_human 3
0 votes
1 reply
1.1K views
Absolute counts or relative abundance for BC distance matrix
metagenomics microbiome
written by mail2steff 7
0 votes
0 replies
644 views
The differences between pipelines for lncRNA identification
cufflinks stringtie lncrna
written by ZZOYEA 2
0 votes
0 replies
629 views
News: Online course: Genomic Data Visualization with R
data-visualisation genomic-data r
written by Physalia-courses 281
3 votes
2 replies
4.9K views
Tool: VCF2PopTree: build a phylogenetic tree from a VCF file
vcf2phylogenetictree
updated by hewm2008 5 • | written by sankar2004 6
0 votes
3 replies
1.8K views
temp directory as output in snakemake
directory temp snakemake
updated by Jesse 94 • | written by hamarillo 8
0 votes
2 replies
1.3K views
Does Biopython.Blast allow you to read nucleotide sequences with ambiguous bases?
biopython blast
updated by Joe 2.2K • | written by Airhead 0
0 votes
0 replies
530 views
How many reads per cells are needed for splicing isoform analysis with Pac Bio long. read sequencing?
splicing isoform
written by jeremy.wen 0
0 votes
0 replies
615 views
Are there tools for protein family synteny searches?
pfam interpro synteny
written by hopf 1
0 votes
7 replies
2.9K views
COBS Indexing genomes - understand the output
indexing cobs genomes cobs
updated by Jianshu_Zhao 0 • | written by davidmaimoun 6
3 votes
0 replies
1.4K views
News: Now available for download: New, more efficient BLAST core_nt database
ncbi blast
written by PeterC_NCBI 53
0 votes
6 replies
1.9K views
Finding novel transcripts
blastx transcripts
updated by biofalconch 132 • | written by Bushra Bibi 8
0 votes
7 replies
2.0K views
Unexpected strandness using salmon
salmon strandness star rnaseq dtu
updated by ATpoint 9.1K • | written by zea 1
0 votes
10 replies
3.9K views
bcl-convert cannot create output directory structure at the path specified
illumina reads bcl-convert index demultiplexing
written by giulia.trauzzi 3
0 votes
1 reply
822 views
How to tell if a proteome is estimated or measured?
genome proteome
updated by dthorbur 350 • | written by dec986 38
0 votes
2 replies
3.2K views
Pseudobulk for scRNA-seq: sum or mean?
scrna-seq pseudobulk
updated by Ming Tommy Tang 469 • | written by adele 0
0 votes
4 replies
1.5K views
How can I create an aesthetic gene neighborhood diagram from CSV data to showcase synteny?
r plot diagram visualization
written by Rohan 4
0 votes
1 reply
678 views
Detectection of premature termination codons from RNA-Seq data
rna-seq
updated by Ram 4.5K • | written by LlamaZombie 0
0 votes
0 replies
424 views
Plotting phenotype vs allele
gwas
written by MiauMiau 0
0 votes
4 replies
1.4K views
Tools for estimating telomere length
telomere cancer
updated by clealk 8 • | written by chictu 1
0 votes
1 reply
1.0K views
How to get the list of species in biomart plant?
biomart rna-seq plant
updated by Ram 4.5K • | written by raheleh 0
0 votes
0 replies
651 views
HPV virus in human genome
hpv gatk pathseq cancer
written by chictu 1
0 votes
3 replies
1.2K views
Oxford Nanopore Sequencing Output Related
oxford-nanopore
updated by Ram 4.5K • | written by Bhavya 0
0 votes
1 reply
1.3K views
DESeq2 on a complex design
rna-seq deseq2
updated by BioinfGuru 214 • | written by Chengrui 0
0 votes
0 replies
745 views
Visium spatial transcriptomics slide with two tissue samples
spatial-transcriptomics visum
updated by Ram 4.5K • | written by Chirag Nepal 240
0 votes
2 replies
1.5K views
Alternative Visualization Methods for CLANS Output: Using Cytoscape or Other Tools
visualization clans cytoscape network
written by Rohan 4
0 votes
3 replies
1.6K views
Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
samtools flagstat scrnaseq
updated by swbarnes2 1.5K • | written by juyeonlee 0
1 vote
3 replies
4.1K views
Downloading 1000genome phase 3 data in 38 build
1000genomes
updated by nareshmvr 1 • | written by AVA 4
0 votes
2 replies
1.0K views
Discrepancy in HISAT2 Alignment Rates for Paired-End vs. Single-End Reads
ngs hisat2 rna-seq alignment
written by Ujjawal 0
0 votes
0 replies
579 views
Copy number: summarize segmented regions into chromosome arms
chromosome-arm copy-number
updated by Ram 4.5K • | written by Ezhil La 4
0 votes
6 replies
2.9K views
How to check if all read names are paired properly in paired end fastq.gz files?
samtools illumina paired-end
updated by LChart 518 • | written by DNAngel 26
0 votes
0 replies
768 views
SMART-seq normalizarion and integration
smart-seq single-nuclei normalization rna-seq single-cell
written by vigbr 2
0 votes
0 replies
442 views
results comparison from KARGA, kma and amr-meta
karga amr-meta kma
updated by Ram 4.5K • | written by minoonasr 0
0 votes
4 replies
1.7K views
PolyA in FastQC results from EM-Seq?
fastqc wgbs polya methylation emseq
written by Watermelon 2
0 votes
1 reply
1.5K views
How is the observed frequencies obtained via HHBlits?
drnapred protein hhblits hmm
updated by Mensur Dlakic 3.0K • | written by jet 0
0 votes
0 replies
536 views
filtering blastx output file
blastx query
written by Bushra Bibi 8
0 votes
2 replies
897 views
Where can I find mutation status in GEO?
geo
written by Nona 9
0 votes
1 reply
700 views
Empty VCF after Strelka
strelka snp wgs strelka2
updated by Pierre Lindenbaum 17K • | written by isMM 0
3 votes
12 replies
5.5K views
Forum: How to improve a bioinformatics study and paper so that it is not considered "too preliminary" by publishers and journals?
deg journal
updated by Matthias Zepper 524 • | written by egascon 6
0 votes
1 reply
736 views
Using BLASTp with Custom Substitution Matrices
blastp
updated by biofalconch 132 • | written by H.Hasani 101
0 votes
0 replies
580 views
Person neoplasm cancer status
tumor neoplasm
updated by Ram 4.5K • | written by maryak 2
1 vote
6 replies
1.7K views
Use LiftOver without knowing reference Fasta of used vcf file
vcf
updated by GenoMax 16K • | written by Lukas 13
0 votes
0 replies
695 views
How to convert Illumina SNP ids having mappings to multiple RSID in loci to rsid file ?
23me illumina conversion gsa3.0
written by vasank1958 0
0 votes
1 reply
944 views
Proteomes: measured or predicted from genomes/transcriptomes?
genome proteome
updated by Mensur Dlakic 3.0K • | written by dec986 38
0 votes
11 replies
4.5K views
Rosetta make_fragments.pl fails: "Cannot initialize readdb for nr database"
software-error nr rosetta
updated by Noora 0 • | written by Alex_I 0
Recent Votes
Recent Locations
Recent Replies