Are there tools for protein family synteny searches?
There is a particular protein family I am interested in. I am curious if there is a good way to look at what other protein domains tend to co-occur with this family in other genomes, as well as identifying specific subsets of genes that co-occur with specific other family members.
Are there any tools specifically made for this? EFI-GNT (https://efi.igb.illinois.edu/efi-gnt/) mostly accomplishes this, but I am curious if there are other options. Is this possible on BioCyc or via some specific blast search?
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