Empty VCF after Strelka
Hello, I am trying to call variants on wgs data using strelka with the following command:
strelka-2.9.2.centos6_x86_64//bin/configureStrelkaGermlineWorkflow.py \
--bam groups.bam \
--referenceFasta hg38/hg38.fa \
--runDir testStrelka
But after appearing to run successfully, it outputs the "Strelka germline workflow successfully completed" message the vcf file that is returned contains no variants, only the information of the run and the length of the contigs, could this be a problem of my data?
Thanks
• 693 views
•
link
0 answers
No answers yet.
Log in to answer this question.
see also : https://github.com/Illumina/strelka/issues/176