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0 votes
3 replies
1.1K views
plink2 giving multiple errors
plink2
updated by bk11 312 • | written by puneet 0
0 votes
1 reply
1.5K views
LigPlot (LigPlus) Giving Different Interactions on Command Line and GUI
python protein-protein-interaction structural-bioinformatics pdb
written by Aman Vishwakarma 1
0 votes
1 reply
1.0K views
Understanding the Principle and Mechanism of K-mer Alignment in Bioinformatics
k-mers alignment
updated by GenoMax 16K • | written by Dim 0
1 vote
5 replies
1.9K views
Nanopore Data Quality Check
qc fungi genome-assembly nanopore
written by SomeOne 33
0 votes
3 replies
1.2K views
Trouble Submitting Forms on Duet for Protein Stability using Web scraping technique (Requests and BeautifulSoup Packages)
web-scraping web-service protein python
updated by Ram 4.5K • | written by Aman Vishwakarma 1
0 votes
5 replies
19K views
Combine paired-end fastq files
next-gen-sequencing
updated by xiaoguang 16 • | written by 112498262 1
0 votes
3 replies
1.3K views
Is there any tool that can search for a pattern (while allowing mismatch) in fastq file?
next-generation-sequencing trimming-tools
updated by xiaoguang 16 • | written by Joshua 2
0 votes
4 replies
1.3K views
Use alignment as reference genome to separate DNA from a mixed sample
human sequencing nanopore alignment
updated by GenoMax 16K • | written by njornet 2
0 votes
1 reply
756 views
compare vg stat scores
vg
updated by Jordan M Eizenga 78 • | written by aaaniich 0
0 votes
0 replies
560 views
BPGA analysis not generating all plots
bpga pan-genome
updated by Ram 4.5K • | written by athira112athira 1
0 votes
4 replies
1.2K views
AWK script missing space after 3rd field
sfs awk angsd
written by MboiTui 2
0 votes
0 replies
656 views
Cannot Align My Consensus fasta
bcftools consensus alignment variant-calling
updated by Ram 4.5K • | written by davidmaimoun 6
0 votes
4 replies
2.1K views
Should the amount of DNA input used for ChIP-seq library preparation be matched between the control and experimental groups?
chip-seq library-preparation
updated by ATpoint 9.1K • | written by Ian 0
0 votes
4 replies
4.2K views
How to do Tajima's D analysis?
snp genome
updated by Mensur Dlakic 3.0K • | written by amitgourav.ghosh12 7
0 votes
4 replies
6.1K views
Tajima's D Using SNP data ONLY
tajima's d snp
updated by xoaib 0 • | written by aberry814 8
0 votes
2 replies
7.4K views
Calculating Tajima's D for an individual genome vs. for population of genomes vs. for genes
tajima'sd target-of-selection population-genetics
updated by xoaib 0 • | written by severalorks 11
0 votes
1 reply
1.7K views
Tajima's D calculation for specific genes in multi-sample VCF
neutrality genetics tajimad
updated by xoaib 0 • | written by Muhammad 0
0 votes
5 replies
3.1K views
error from msigdbr
rna-seq msigdbr msigdb yeast
written by hamid.gaikani 8
0 votes
1 reply
972 views
Many MAF files in tcga case
maf tcga
updated by Zhenyu Zhang 130 • | written by Beowulf 0
0 votes
2 replies
1.2K views
Optimising False Positive Detection in NGS Pipelines Using Mapping and Base Quality Scores
basequalityranksumtest
written by ManuelDB 11
0 votes
6 replies
1.3K views
Variant Sampling programm
variant-sampler vsampler
written by berndmann 0
0 votes
1 reply
611 views
RNA seq alignment issue
rna-seq
updated by Ram 4.5K • | written by Hashan 0
0 votes
1 reply
584 views
How to get all GO IDs of a specific GO term
go
updated by GenoMax 16K • | written by jet 0
0 votes
2 replies
1.3K views
How to use SNPlocs.Hsapiens.dbSNP150.GRCh38
twosamplemr snp gwas
written by learner__lin2003 0
0 votes
0 replies
730 views
News: Online course on Reproducibility Data Analysis with R
r github git reproducibility docker
written by Physalia-courses 281
0 votes
2 replies
1.2K views
normalizing multiple conditions together or not
normalization edger
written by markus.glass 4
0 votes
4 replies
1.6K views
MACS2 for multiple conditions in ATACseq analysis
mac2
written by QX 9
2 votes
1 reply
1.8K views
Right method to annotate genes on pangenome graph
pangenome vg
updated by colindaven 844 • | written by Quanyu 2
0 votes
0 replies
643 views
positional conservation scores
conservation-scores fasta msa
updated by Ram 4.5K • | written by wannabio 0
1 vote
4 replies
1.6K views
Increase the memory and core usage of R
r
updated by Mensur Dlakic 3.0K • | written by QX 9
0 votes
5 replies
1.8K views
MetaTranscriptomics amount of viable reads
metagenomics rna-seq transcriptomics
updated by andres.firrincieli 412 • | written by zjhennin 0
6 votes
0 replies
2.0K views
Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated by Ram 4.5K • | written by Ming Tommy Tang 469
0 votes
1 reply
1.1K views
need help analyzing Geomx spatial transcriptomics data
spatialtranscriptomics nanostring geomx
updated by 4732b159 0 • | written by Cony Lab 0
4 votes
3 replies
1.9K views
How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
r gff3 fasta genome
updated by Ram 4.5K • | written by Chilly 129
0 votes
2 replies
1.5K views
Convert hifi_reads.bam to fastq for CellRanger
isoseq cellranger mas-seq
written by nwerry 0
0 votes
2 replies
1.4K views
Annotating enhancer elements (GRCh38)
annotation features enhancers
written by eebloom 11
0 votes
0 replies
491 views
Molecular docking and molecular dynamics
molecular-docking molecular-dynamics
updated by Ram 4.5K • | written by Under 0
0 votes
3 replies
1.2K views
Help with edgeR analysis
edger rna-seq
updated by Raag 2 • | written by rb_99 0
0 votes
1 reply
834 views
Any body know how to convert CHR_BP to SNP rsid?
twosamplemr snp gwas
updated by GenoMax 16K • | written by learner__lin2003 0
0 votes
9 replies
2.7K views
Kallisto - Effect of Kmer size on quantification?
kallisto single-overhang kmer rna-seq length
written by jayeshkumarsundaram 1
0 votes
2 replies
1.0K views
Batch correction for protein data
proteomics deseq2 batch-correction
written by 4732b159 0
0 votes
1 reply
2.2K views
Normalized enrichment Score (NES) cut-off
nes gsea analysis threshold go
updated by GenoMax 16K • | written by shakyaram079 0
0 votes
1 reply
1.7K views
Enrichment analysis guide for msu7 rice genome
transcriptome kegg msu7 rice goenrichment
updated by 白 0 • | written by sumitra.20 0
0 votes
4 replies
1.7K views
Merging two sequencing datasets
novaseq genomics
updated by swbarnes2 1.5K • | written by laura.bertola 0
0 votes
6 replies
1.7K views
header sequence interpretation
illumina fastq short-read
updated by Ram 4.5K • | written by Meghan.T 1
0 votes
0 replies
733 views
TCGAbiolinks: Accessing Matched Samples' Data Across -Omics Hierarchies
tcgabiolinks mixomics multi-omics tcga-brca
written by Desmond 0
0 votes
2 replies
1.0K views
EditingSites for mm39
mouse genome-browser mus-musculus
written by alba 1
0 votes
1 reply
1.2K views
Don't understand three modes of TCGA STAR 2-pass
gdc rna-seq tcga
updated by Zhenyu Zhang 130 • | written by tomas4482 43
0 votes
2 replies
1.1K views
Getting A List Of Pfam Domains Involved in DNA-binding
proteins hmmer pfam dna-binding
written by jet 0
0 votes
1 reply
872 views
Pangenome validation
pangenome
updated by Uveyik 8 • | written by aaaniich 0
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