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0 votes
0 replies
531 views
very basic metascape raw data query
mrna mirna metascape
updated by Ram Ram • written by Yvonne • Yvonne
0 votes
0 replies
537 views
Web server/tool for structural motif prediction on multiple proteins?
pdb
updated by Ram Ram • written by pl559 • pl559
0 votes
1 reply
1.4K views
AutoDock Tools: problems with "choose torsion in currently selected residues"
autodocktools docking
updated by GenoMax GenoMax • written by Josefina • Josefina
0 votes
5 replies
1.8K views
Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
featurecounts
updated by swbarnes2 swbarnes2 • written by 2406691063 • 2406691063
0 votes
0 replies
426 views
Length of base-pairing required in Argonautes
structural-biology argonaute
updated by Ram Ram • written by Ali • Ali
0 votes
0 replies
636 views
Clarification on ConClave Scoring and KMA Compatibility with Nanopore Reads
kma nanopore alignment
written by Dim • Dim
1 vote
5 replies
3.0K views
DESeq2 results vs. shrinkage results
shrinkage deseq2 sequencing rna
updated by i.sudbery i.sudbery • written by hagl • hagl
0 votes
1 reply
696 views
how to visualize Geno Ontology classification
gene-ontology
updated by bk11 • bk11 • written by fati90sellam90 • fati90sellam90
0 votes
1 reply
745 views
Extract the Variables with the Most Influence on the Ordination in an LDA
biostatistics lda r
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Mgs3 • Mgs3
0 votes
2 replies
1.4K views
Building a Kraken2 Database
taxonomy kraken2 metagenomics
updated by Ram Ram • written by Ahiad Chen Zion • Ahiad Chen Zion
0 votes
2 replies
1.9K views
Remove the venn diagram fill color
r ggplot2 venn
written by G.S • G.S
0 votes
3 replies
928 views
samtools sort
samtools rna-seq
updated by ATpoint ATpoint • written by Srujana • Srujana
0 votes
1 reply
1.3K views
batchtools_slurm job setting with seurat
seurat hpc slurm
updated by DBScan • DBScan • written by marco.barr • marco.barr
0 votes
1 reply
860 views
Find closest taxonomic ID from a list of tax IDs
taxonomy ncbi
updated by GenoMax GenoMax • written by noodle noodle
1 vote
6 replies
2.0K views
What should be the term, "insert" or "insert size"?
tlen sequencing alignment
updated by Ram Ram • written by Anisur Rahman • Anisur Rahman
0 votes
1 reply
697 views
Regarding correlation analysis
correlation
updated by Ram Ram • written by Stuti • Stuti
0 votes
0 replies
645 views
save.rnb.set warnings when trying to save rnb.set
rnbeads methylation bioconductor
written by hayleyw • hayleyw
0 votes
1 reply
843 views
How do I use msigdb to annotate the single cell data?
msigdb single-cell
updated by Ram Ram • written by biotrekker • biotrekker
0 votes
2 replies
1.4K views
Bulk RNA seq analysis on multiple conditions (4)
rna-seq
updated by Ram Ram • written by SO-YEON • SO-YEON
0 votes
3 replies
2.1K views
Best way of getting a good introduction with bioconductor and biopyhton
bioconductor r biopython
updated by schlogl schlogl • written by ashwing.kofficial • ashwing.kofficial
0 votes
0 replies
625 views
GTEx files, single tissue cis-eQTLs
eqtl gtex
updated by Ram Ram • written by dddyyylll • dddyyylll
0 votes
2 replies
841 views
CpG island identification
cpg-islands
written by oluwoleolufunke • oluwoleolufunke
0 votes
3 replies
1.1K views
retrieve genomic positions and chromosome number for a list of genes
position seq genomic rna
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Fatemeh • Fatemeh
0 votes
3 replies
1.3K views
TB-PROFILER DELLY ISSUE
delly tb-profiler
updated by Jody Phelan • Jody Phelan • written by Bhawna • Bhawna
0 votes
1 reply
873 views
When to use Sam Sort on a Bam file?
sort sam collate bam
updated by Ram Ram • written by Arthur • Arthur
0 votes
1 reply
1.1K views
RepeatMasker format in SQuIRE Fetch
squire repeatmasker
updated by Bioinformatics_16 • Bioinformatics_16 • written by Javier • Javier
0 votes
7 replies
2.4K views
Could not locate a HISAT2 index corresponding to basename
hisat2 grch38
updated by GenoMax GenoMax • written by altobialmunthir • altobialmunthir
0 votes
1 reply
886 views
Different Size VCF
gatk vcf compression
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Sd • Sd
0 votes
1 reply
1.2K views
Gene mapping issue using ClusterProfiler
clusterprofiler
written by alicecol • alicecol
3 votes
4 replies
4.2K views
looking for 1000g hg38 reference data to anchor with my genomic data to plot the principal components
gwas hg38 principal-components
updated by chrchang523 chrchang523 • written by nicole • nicole
0 votes
1 reply
948 views
Array vs WGBS: Can't I use a package designed for array data for WGBS or any other data?
wgbs methylation array
written by Burak Özyürek • Burak Özyürek
0 votes
4 replies
1.6K views
evolutionary trees of sepecies
species evolutionary
updated by dthorbur dthorbur • written by zhu • zhu
6 votes
0 replies
1.2K views
News: Changes coming to NCBI Web blast in August 2024
nt core_nt blast ncbi wwwblast
written by GenoMax GenoMax
0 votes
0 replies
988 views
Forum: Advice on Entering the field of Bioinformatics in Canada
career
updated by Ram Ram • written by ubhimanpreet • ubhimanpreet
1 vote
0 replies
497 views
Unusual indel peaks in bam file
rna-seq
updated by ATpoint ATpoint • written by boczniak767 boczniak767
0 votes
1 reply
945 views
Fragment size of published single end RNAseq data
ngs single-end rna-seq rsem
updated by Ram Ram • written by kojima.1aki • kojima.1aki
0 votes
1 reply
795 views
Allele frequency in gene sequence
allele-frequency
updated by Ram Ram • written by Elizabeth • Elizabeth
0 votes
1 reply
1.1K views
How to get copy number gain/loss from TCGA gene_level_copy_number
cnv copy-number tcga
updated by Ram Ram • written by NB • NB
0 votes
0 replies
731 views
Obtaining enriched motif result for each peak using ArchR
motif archr r enrichment
written by yuyu • yuyu
0 votes
0 replies
628 views
Simulate interaction between a DNA and RNA with a Cas9 protein?
cas9 simulation molecular-dynamics
updated by Ram Ram • written by yourgoodnabor • yourgoodnabor
0 votes
1 reply
1.0K views
High Amount of UnAssignedNoFeatures in FeatureCounts Output
rna star featurecount
updated by Ram Ram • written by Tom Brady • Tom Brady
3 votes
5 replies
4.0K views
How to normalize long-read RNA-seq data for comparison with short-reads
rnaseq long-reads normalization short-reads
updated by GenoMax GenoMax • written by Bernardo • Bernardo
0 votes
0 replies
852 views
Job: Assistant Teaching Professor in Biological Sciences
biology highereducation ucsd lifescience
written by UCSDBioSci • UCSDBioSci
0 votes
1 reply
1.6K views
First nextflow script and I'm facing alot of errors, is my approach even correct?
conda bash python groovy nextflow
updated by Marcel Ribeiro-Dantas • Marcel Ribeiro-Dantas • written by Faith • Faith
0 votes
0 replies
799 views
Help in understanding cd-hit cluster results
cd-hit
written by Nilavrah • Nilavrah
0 votes
1 reply
1.3K views
How to split a protein sequence data into train and test set based on a sequence identity cutoff?
clustering protein
updated by Mensur Dlakic Mensur Dlakic • written by Nilavrah • Nilavrah
0 votes
7 replies
1.9K views
How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata rna
updated by ATpoint ATpoint • written by AlexStar • AlexStar
0 votes
1 reply
750 views
Find UniProt ID automatically for thousands of protein sequences
uniprot
updated by GenoMax GenoMax • written by kareem.bagdadi • kareem.bagdadi
0 votes
2 replies
1.3K views
Ecocyc/Biocyc bulk download
gtf bed gff annotation
written by noodle noodle
0 votes
0 replies
838 views
How to best check allele flipping between bed files?
plink bed
written by DN99 • DN99
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