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0 votes
1 reply
1.8K views
Is there a way to calculate percent identity and percent similarity with Bio.Align?
biopython bio.align
updated by Joe 2.2K • | written by Tom 5
0 votes
4 replies
1.3K views
To randomly generate a list of insertions and deletions
si
written by xmy1990 0
0 votes
4 replies
1.7K views
Genome homology tool comparing two distance species
homology genome
updated by SanjidaR_NCBI 7 • | written by Chris 1
0 votes
4 replies
1.2K views
Duplication rate in FastQC report
fastqc
updated by GenoMax 16K • | written by Ludmila 0
0 votes
0 replies
739 views
Command line Prophage detections tools
phages genomes bacterial
written by Rika 0
0 votes
0 replies
673 views
Diffbind: creating an affinity heatmap for clustering
diffbind
written by BT 0
0 votes
3 replies
1.6K views
RNA-seq anlaysis > coding region vs. non coding region
non-coding coding rna-seq
updated by Shred 163 • | written by maplewj 2
0 votes
1 reply
781 views
Filtering Non-Homozygous and Non-Heterozygous Variants in DNA Analysis Pipeline
ngs
updated by Ram 4.5K • | written by ManuelDB 11
0 votes
0 replies
647 views
Does Plink under perform ? ( GWAS )
snp gwas qq-plot plink
updated by GenoMax 16K • | written by basnet.soren 0
0 votes
4 replies
2.0K views
Seeking Guidance on Achieving Chromosome-Level Assembly for Insect Genome
insect scaffold contig chromosome
written by Dragn 0
0 votes
0 replies
614 views
Annotated ribosome pymol file
ribosome structure pymol pse
written by noodle 65
0 votes
2 replies
941 views
PopGenome stats for each population
popgenome
written by Yixuan 0
0 votes
6 replies
1.5K views
Is there any EnsEMBL 90 transcript annotations?
gtf cgat rna-seq
written by PK 13
3 votes
0 replies
1.6K views
Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macos unix
updated by Ram 4.5K • | written by Ming Tommy Tang 469
0 votes
2 replies
927 views
Error in GATK BaseRecalibrator
baserecalibrator gatk
updated by Ram 4.5K • | written by Sarah 0
0 votes
4 replies
1.4K views
VCFtools warning message
vcftools variant-calling
updated by Ram 4.5K • | written by ashaneev07 5
1 vote
1 reply
1.1K views
Enrichr : how to provide background ?
enrichr
updated by GenoMax 16K • | written by Sara 4
0 votes
1 reply
679 views
Why are polyA adaptors found in ATAC-seq reads?
atacseq
updated by ATpoint 9.1K • | written by MIKA 0
0 votes
1 reply
939 views
Extract significant DEGs using Seurat FindConservedMarkers and FindAllMarkers
findconservedmarkers seurat findallmarkers
updated by allingt 4 • | written by Jay 0
0 votes
0 replies
751 views
Workflow for functional analysis of differential gene core modules: KEGG, GSEA, and GO enrichment
gsea ppi-network enrichment-analysis kegg
written by mizzika 0
0 votes
1 reply
1.3K views
HLA-HD tool for genomic imputation
bash imputation genomics
updated by Ram 4.5K • | written by fra.r.silvestro 1
0 votes
1 reply
1.1K views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated by chrchang523 1.1K • | written by _quantum_girl_ 8
0 votes
12 replies
4.3K views
Troubleshooting RNA-seq data with DNA contamination
rna-seq deseq2 dna-contamination
updated by GenoMax 16K • | written by DKA 4
0 votes
0 replies
562 views
How to get Characteristics Field From GEO using Entrez or FTP Website ?
ftp geo entrez
written by Kiefer 0
0 votes
2 replies
1.0K views
GSEA, RNA-Seq
gene-set-enrichment pathway
updated by Ram 4.5K • | written by Rob 18
2 votes
6 replies
2.3K views
how to calculate correlations between sparse data
correlations
updated by Mensur Dlakic 3.0K • | written by leranwangcs 15
0 votes
1 reply
800 views
quary relted to ChIPpeakAnno & VennDiagram
r chip-seq
updated by rfran010 174 • | written by Arbaz 0
0 votes
0 replies
633 views
protein-ligand complex study in liposome
docking cheminformatics md-simulation
updated by Ram 4.5K • | written by Noor 0
0 votes
1 reply
715 views
Technical Issue to building a database on snpEff for SNP calling annotation in Rice
snpeff snp
updated by Ram 4.5K • | written by Brijesh 0
0 votes
0 replies
661 views
Tool: Phylogenetic Tree Collapser
phylogenetics
written by Hugo 40
0 votes
3 replies
1.2K views
Why is one mate not in proper pair in one case, when it is in proper pair in a very similar case?
bwa-mem alignment mapq
updated by Istvan Albert 10K • | written by fesokaw279 0
0 votes
0 replies
626 views
reasonable parameters for graph_test from monocle3
pseudotime-trajectory-analysis monocle3 graph-test
updated by Ram 4.5K • | written by sleepystudent 0
0 votes
2 replies
1.4K views
Clusters of orthologous research tools
genome annotation
updated by dthorbur 350 • | written by anna 0
0 votes
0 replies
577 views
PCR Duplicates -- Targeted DNA NGS Panels
ngs duplicates panel
written by bruceracey 1
0 votes
2 replies
1.1K views
HTSLIB/VCF/C : get the first variant of each chromosome using htslib
htslib vcf c
written by Pierre Lindenbaum 17K
0 votes
3 replies
4.3K views
Change color of enrichGO bar plot
enrichgo r clusterprofiler
updated by GenoMax 16K • | written by nbe 0
0 votes
3 replies
1.2K views
NCBI-SRA file downloading error
sra
updated by Ram 4.5K • | written by Imran 0
0 votes
3 replies
2.0K views
Download data from data dryad using CLI?
datadryad
written by selplat21 2
0 votes
4 replies
1.3K views
trailing paired-end slashes (/) in BAM file
awk bam sed
updated by Ram 4.5K • | written by Matteo Ungaro 16
4 votes
1 reply
1.1K views
How can I find all GO term IDs related to transcription factor?
go-term transcription-factor go gene-ontology tf
updated by Ram 4.5K • | written by Chilly 129
0 votes
1 reply
764 views
What's the difference between different quality control softwares?
qc trimomatic trim_galore
updated by GenoMax 16K • | written by Pallondyle 0
0 votes
1 reply
829 views
Simulating mRNA-seq data using VG - theoretical question
mrna-seq vg sim
updated by Jordan M Eizenga 78 • | written by AshleeThomson 13
0 votes
0 replies
583 views
Determining SNP overlap of two different arrays
axiom snp array chip overlap
written by vannajhay 0
0 votes
0 replies
547 views
Feature name in Seurat metadata
seurat
written by Nicholas 2
0 votes
1 reply
732 views
Applying Regression on my dataset
variables correlation regression
updated by Raag 2 • | written by mrashad 9
0 votes
2 replies
853 views
Help Needed: Finding FASTA Sequences for Specific HIV Envelope Protein Subtypes
hiv-env-subtypes hiv-env genbank
written by mark.pekarsky 2
0 votes
3 replies
1.6K views
Is ComBat not able to to handle only two batches? What are good alternatives?
combat batch correction
written by samuelandjw 27
0 votes
0 replies
491 views
Merging 1000g with my data
merge plink1.9 genotyping-rate
written by curious_butterfly 0
0 votes
1 reply
1.4K views
p values, q values, stat.mean for gage() outputs - What to report and why?
gage pathway-analysis gsea r
updated by BioinfGuru 214 • | written by jpvoth 0
0 votes
10 replies
2.5K views
Weird insert size distribution plot
adapter-trimming reads fastq insert-size
written by Ankit 52
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