This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
0 replies
629 views
positional conservation scores
conservation-scores fasta msa
updated by Ram Ram • written by wannabio • wannabio
1 vote
4 replies
1.6K views
Increase the memory and core usage of R
r
updated by Mensur Dlakic Mensur Dlakic • written by QX • QX
0 votes
5 replies
1.7K views
MetaTranscriptomics amount of viable reads
metagenomics rna-seq transcriptomics
updated by andres.firrincieli andres.firrincieli • written by zjhennin • zjhennin
6 votes
0 replies
2.0K views
Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated by Ram Ram • written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
1.1K views
need help analyzing Geomx spatial transcriptomics data
spatialtranscriptomics nanostring geomx
updated by 4732b159 • 4732b159 • written by Cony Lab • Cony Lab
4 votes
3 replies
1.8K views
How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
r gff3 fasta genome
updated by Ram Ram • written by Chilly • Chilly
0 votes
2 replies
1.4K views
Convert hifi_reads.bam to fastq for CellRanger
isoseq cellranger mas-seq
written by nwerry • nwerry
0 votes
2 replies
1.4K views
Annotating enhancer elements (GRCh38)
annotation features enhancers
written by eebloom • eebloom
0 votes
0 replies
487 views
Molecular docking and molecular dynamics
molecular-docking molecular-dynamics
updated by Ram Ram • written by Under • Under
0 votes
3 replies
1.2K views
Help with edgeR analysis
edger rna-seq
updated by Raag • Raag • written by rb_99 • rb_99
0 votes
1 reply
811 views
Any body know how to convert CHR_BP to SNP rsid?
twosamplemr snp gwas
updated by GenoMax GenoMax • written by learner__lin2003 • learner__lin2003
0 votes
9 replies
2.7K views
Kallisto - Effect of Kmer size on quantification?
kallisto single-overhang kmer rna-seq length
written by jayeshkumarsundaram • jayeshkumarsundaram
0 votes
2 replies
1.0K views
Batch correction for protein data
proteomics deseq2 batch-correction
written by 4732b159 • 4732b159
0 votes
1 reply
2.2K views
Normalized enrichment Score (NES) cut-off
nes gsea analysis threshold go
updated by GenoMax GenoMax • written by shakyaram079 • shakyaram079
0 votes
1 reply
1.6K views
Enrichment analysis guide for msu7 rice genome
transcriptome kegg msu7 rice goenrichment
updated by 白 • 白 • written by sumitra.20 • sumitra.20
0 votes
4 replies
1.6K views
Merging two sequencing datasets
novaseq genomics
updated by swbarnes2 swbarnes2 • written by laura.bertola • laura.bertola
0 votes
6 replies
1.7K views
header sequence interpretation
illumina fastq short-read
updated by Ram Ram • written by Meghan.T • Meghan.T
0 votes
0 replies
720 views
TCGAbiolinks: Accessing Matched Samples' Data Across -Omics Hierarchies
tcgabiolinks mixomics multi-omics tcga-brca
written by Desmond • Desmond
0 votes
2 replies
994 views
EditingSites for mm39
mouse genome-browser mus-musculus
written by alba • alba
0 votes
1 reply
1.2K views
Don't understand three modes of TCGA STAR 2-pass
gdc rna-seq tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by tomas4482 • tomas4482
0 votes
2 replies
1.1K views
Getting A List Of Pfam Domains Involved in DNA-binding
proteins hmmer pfam dna-binding
written by jet • jet
0 votes
1 reply
862 views
Pangenome validation
pangenome
updated by Uveyik • Uveyik • written by aaaniich • aaaniich
0 votes
2 replies
1.3K views
is that statistical correct to use DEseq2 for proteomics data
proteomics deseq2
updated by ATpoint ATpoint • written by QX • QX
0 votes
0 replies
763 views
Cell Typist Providing different results between iterations
python single-cell cellannotation celltypist
updated by Ram Ram • written by Manuel Sokolov Ravasqueira • Manuel Sokolov Ravasqueira
1 vote
1 reply
1.5K views
How do I visualize variants from VCF file in IGV?
igv handbook
written by Fanta • Fanta
0 votes
2 replies
1.3K views
How can we identify if there are neighboring genes or overlapping promoter regions within the 1000 bp upstream of the transcription start site (TSS) that we have defined?
tss tfbs
updated by Ram Ram • written by Cluster • Cluster
0 votes
0 replies
610 views
Gene-pathway network with FDR or p value
clusterprofiler
written by Chris • Chris
1 vote
7 replies
2.7K views
Join command for the issue
join linux
updated by Ram Ram • written by Confused_human • Confused_human
0 votes
1 reply
1.1K views
Absolute counts or relative abundance for BC distance matrix
metagenomics microbiome
written by mail2steff mail2steff
0 votes
0 replies
634 views
The differences between pipelines for lncRNA identification
cufflinks stringtie lncrna
written by ZZOYEA • ZZOYEA
0 votes
0 replies
623 views
News: Online course: Genomic Data Visualization with R
data-visualisation genomic-data r
written by Physalia-courses Physalia-courses
3 votes
2 replies
4.8K views
Tool: VCF2PopTree: build a phylogenetic tree from a VCF file
vcf2phylogenetictree
updated by hewm2008 • hewm2008 • written by sankar2004 • sankar2004
0 votes
3 replies
1.7K views
temp directory as output in snakemake
directory temp snakemake
updated by Jesse • Jesse • written by hamarillo • hamarillo
0 votes
2 replies
1.3K views
Does Biopython.Blast allow you to read nucleotide sequences with ambiguous bases?
biopython blast
updated by Joe Joe • written by Airhead • Airhead
0 votes
0 replies
522 views
How many reads per cells are needed for splicing isoform analysis with Pac Bio long. read sequencing?
splicing isoform
written by jeremy.wen • jeremy.wen
0 votes
0 replies
600 views
Are there tools for protein family synteny searches?
pfam interpro synteny
written by hopf • hopf
0 votes
7 replies
2.8K views
COBS Indexing genomes - understand the output
indexing cobs genomes cobs
updated by Jianshu_Zhao • Jianshu_Zhao • written by davidmaimoun • davidmaimoun
3 votes
0 replies
1.4K views
News: Now available for download: New, more efficient BLAST core_nt database
ncbi blast
written by PeterC_NCBI • PeterC_NCBI
0 votes
6 replies
1.8K views
Finding novel transcripts
blastx transcripts
updated by biofalconch biofalconch • written by Bushra Bibi Bushra Bibi
0 votes
7 replies
2.0K views
Unexpected strandness using salmon
salmon strandness star rnaseq dtu
updated by ATpoint ATpoint • written by zea • zea
0 votes
10 replies
3.9K views
bcl-convert cannot create output directory structure at the path specified
illumina reads bcl-convert index demultiplexing
written by giulia.trauzzi • giulia.trauzzi
0 votes
1 reply
811 views
How to tell if a proteome is estimated or measured?
genome proteome
updated by dthorbur dthorbur • written by dec986 dec986
0 votes
2 replies
3.2K views
Pseudobulk for scRNA-seq: sum or mean?
scrna-seq pseudobulk
updated by Ming Tommy Tang Ming Tommy Tang • written by adele • adele
0 votes
4 replies
1.5K views
How can I create an aesthetic gene neighborhood diagram from CSV data to showcase synteny?
r plot diagram visualization
written by Rohan • Rohan
0 votes
1 reply
672 views
Detectection of premature termination codons from RNA-Seq data
rna-seq
updated by Ram Ram • written by LlamaZombie • LlamaZombie
0 votes
0 replies
417 views
Plotting phenotype vs allele
gwas
written by MiauMiau • MiauMiau
0 votes
4 replies
1.3K views
Tools for estimating telomere length
telomere cancer
updated by clealk • clealk • written by chictu • chictu
0 votes
1 reply
978 views
How to get the list of species in biomart plant?
biomart rna-seq plant
updated by Ram Ram • written by raheleh • raheleh
0 votes
0 replies
635 views
HPV virus in human genome
hpv gatk pathseq cancer
written by chictu • chictu
0 votes
3 replies
1.2K views
Oxford Nanopore Sequencing Output Related
oxford-nanopore
updated by Ram Ram • written by Bhavya • Bhavya
Recent Votes
Recent Locations
Recent Replies