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0 votes
2 replies
1.1K views
What tool is best to build plasmid using a reference sequence?
assembly reference wgs
written by blur 30
0 votes
2 replies
1.6K views
Tool to align metagenomic data to reference genome
metagenomics alignment
updated by colindaven 844 • | written by Madde 2
0 votes
0 replies
635 views
CRISPR pooled screening analysis: STARS analysis 'between the groups'
crispr pooled-analysis screening
updated by Ram 4.5K • | written by Yummi Lee 0
0 votes
1 reply
1.4K views
How to find p-value in Cytoscape in network analysis?
analyzation ppi network cytoscape
updated by Scooter 31 • | written by Tiara 0
0 votes
4 replies
3.4K views
Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and antismash tools on multiple samples at once to speed up run time?
bash parallel-processing deeptools
updated by Ming Tommy Tang 469 • | written by Zach G 0
0 votes
0 replies
569 views
Interpreting COG distribution
cogclassifier genomes cog bacterial
written by dlera.lozano 1
0 votes
3 replies
1.2K views
Not all available files shown in TCGA website.
tcga
written by biock 7
0 votes
0 replies
632 views
Consistent somatic CNV calling across samples: spurious, error or real?
manta cnvkit sv somatic cnv
updated by GenoMax 16K • | written by avelarbio46 3
0 votes
2 replies
958 views
Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mutations
snps germline somatic gatk
written by George 3
1 vote
0 replies
765 views
Tool: OpenCRAVAT - Your Open Source Solution for Variant Annotation!
variant-annotation genomics
updated by Ram 4.5K • | written by OpenCRAVAT 1
0 votes
2 replies
1.2K views
BUSCO analysis error
busco
written by Shakunthala Natarajan 2
1 vote
2 replies
1.2K views
Is there a database for housekeeping genes?
normalisation rna-seq ruvseq housekeeping-genes
written by BioinfGuru 214
0 votes
0 replies
544 views
Selection statistics help
statistics genome selection
updated by Ram 4.5K • | written by Jack 0
0 votes
0 replies
517 views
The discrepancy between the bowtie2 alignment summary and the samtools flagstat
bowtie2 alignment summary
updated by GenoMax 16K • | written by daffodil 1
0 votes
1 reply
1.2K views
Analysis of Illumina Infinium MethylationEPIC v2.0
methylationepic infinium
updated by fmueller 5 • | written by ramiro.barrantes 6
0 votes
2 replies
1.0K views
Query regarding the ST visulization
visualization circos sequence
written by Jaykumar 5
0 votes
0 replies
592 views
LD block
linkage-disequilibrium ld-block ld
updated by Ram 4.5K • | written by UPO 0
0 votes
8 replies
1.9K views
using parallel on samtools view
samtools parallel
updated by michael.ante 408 • | written by chictu 1
0 votes
0 replies
936 views
How to choose the minGSsize and maxGSsize parameters in clusterProfilers GSEA
r clusterprofiler gsea
written by edoardofilippi1998 0
0 votes
0 replies
396 views
qPRO-Seq analysis
qpro
written by daffodil 1
0 votes
0 replies
693 views
reference-point setting from computeMatrix
atacseq
written by QX 9
0 votes
2 replies
1.1K views
Issues with Minimap2 and ONT (Nanopore)
minimap nanopore
written by pixie@bioinfo 150
0 votes
0 replies
542 views
which distance used for kmeans in deeptools plotHeatmap
atac deeptools
written by QX 9
0 votes
2 replies
1.1K views
How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated by Pierre Lindenbaum 17K • | written by DareDevil 448
0 votes
6 replies
2.1K views
Geometric optimization following amino acid substitution in PyMol
geometric-optimization pymol
written by Hansen_869 8
0 votes
0 replies
510 views
Function for Cancer Multi-omic Integration Function in Database
multiomic database oncogene integration cancer
written by minsu1794 0
0 votes
0 replies
553 views
StringTie Parameters for Yeast
gffcompare nanopore stringtie rnaseq
written by kyusikkim 2
104 votes
94 replies
277K views
Tools To Calculate Average Coverage For A Bam File?
coverage bam sequencing
updated by GenoMax 16K • | written by Biomed 500
0 votes
4 replies
2.2K views
Reliable method to detect 10x single-cell chemistry?
10x
written by morovatunc 56
0 votes
1 reply
691 views
Multiple annotation in my table counts
rna-seq rna microrna mirnas
written by omicon 4
0 votes
8 replies
3.2K views
Downloading RNAseq datasets from GEO into R
geodatabase transcriptomic
written by Alana 0
0 votes
0 replies
393 views
I can not see the intron region aligned to ref in IGV from ONT direct RNA sequencing
nanopore
written by Zhen 0
0 votes
3 replies
962 views
Console BLAST search in WGS/TSA databases
blast
updated by Ram 4.5K • | written by NK 0
1 vote
1 reply
1.8K views
Error at phase 4 when running GeMoMa (homology-based annotation)
homology gemoma annotation genome
updated by asd63zhengzeyu 1 • | written by bbscience 1
4 votes
4 replies
2.8K views
How to perform reciprocal best hit (RBH) when there are multiple versions of a protein sequence
reciprocal.best.hit protein sequence rbh blast
updated by LChart 518 • | written by Chilly 129
0 votes
2 replies
1.4K views
No boxplots on my FastQC report
fastqc
updated by ATpoint 9.1K • | written by sara.vandenbosch 0
0 votes
0 replies
461 views
GDCRNATools: error in the gdcRNAMerge function
r gdcrnatools studior gdcrnamerge
written by Azra 1
0 votes
0 replies
895 views
Job: Available Bioinformatics PhD Position at the Med Uni Graz, Austria
data-analysis phd transcriptomics medicine
updated by Ram 4.5K • | written by Julia Feichtinger 0
0 votes
1 reply
1.1K views
merge replicate for bigWig files from macs2 peak calling
atac-seq
updated by ATpoint 9.1K • | written by QX 9
0 votes
0 replies
435 views
vg autoindex (Variant with '.' among multiple alts being skipped)
vg
written by yixing 0
0 votes
2 replies
1.1K views
the reference used in Cuffcompare(GENCODE, RefSeq)
gencode rna-seq cuffcompare refseq
written by ZZOYEA 2
0 votes
2 replies
942 views
BWA-MEM PARAMETER TO DETECT MUTATION
bwa bwa-mem bwa
updated by Pierre Lindenbaum 17K • | written by Bhawna 0
0 votes
2 replies
737 views
Source code of metaCV
metagenomics metacv
written by yeah 0
0 votes
2 replies
1.4K views
not centered volcano plot, Seurat
r volcano singlecell seurat
written by sooni 2
0 votes
1 reply
765 views
Blast BRAKER output
braker blast
updated by GenoMax 16K • | written by Tom Brady 0
0 votes
1 reply
969 views
How to identify fastq source - Illumina or ONT?
ont illumina fastq
updated by GenoMax 16K • | written by ChillarAnand 8
1 vote
6 replies
2.7K views
advice for visualizing a graph genome constructed by "vg construct"
vg
written by Jong 1
0 votes
2 replies
1.0K views
NCBIWWW.qblast returning empty XML
ncbiwww qblast blast biopython bio.blast
written by brandon 1
0 votes
0 replies
743 views
News: Course - RNA-Seq Analyses in Non-Model Organisms (online)
bioconductor non-model-organisms nanopore pacbio rna-seq
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
11 replies
2.3K views
Why do I have * in my FASTA? g2gtools diploid
g2gtools rnaseq fasta genome transcriptome
written by jon.klonowski 21
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