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0 votes
1 reply
707 views
Technical Issue to building a database on snpEff for SNP calling annotation in Rice
snpeff snp
updated by Ram Ram • written by Brijesh • Brijesh
0 votes
0 replies
641 views
Tool: Phylogenetic Tree Collapser
phylogenetics
written by Hugo Hugo
0 votes
3 replies
1.2K views
Why is one mate not in proper pair in one case, when it is in proper pair in a very similar case?
bwa-mem alignment mapq
updated by Istvan Albert Istvan Albert • written by fesokaw279 • fesokaw279
0 votes
0 replies
614 views
reasonable parameters for graph_test from monocle3
pseudotime-trajectory-analysis monocle3 graph-test
updated by Ram Ram • written by sleepystudent • sleepystudent
0 votes
2 replies
1.4K views
Clusters of orthologous research tools
genome annotation
updated by dthorbur dthorbur • written by anna • anna
0 votes
0 replies
573 views
PCR Duplicates -- Targeted DNA NGS Panels
ngs duplicates panel
written by bruceracey • bruceracey
0 votes
2 replies
1.1K views
HTSLIB/VCF/C : get the first variant of each chromosome using htslib
htslib vcf c
written by Pierre Lindenbaum Pierre Lindenbaum
0 votes
3 replies
4.2K views
Change color of enrichGO bar plot
enrichgo r clusterprofiler
updated by GenoMax GenoMax • written by nbe • nbe
0 votes
3 replies
1.2K views
NCBI-SRA file downloading error
sra
updated by Ram Ram • written by Imran • Imran
0 votes
3 replies
2.0K views
Download data from data dryad using CLI?
datadryad
written by selplat21 • selplat21
0 votes
4 replies
1.3K views
trailing paired-end slashes (/) in BAM file
awk bam sed
updated by Ram Ram • written by Matteo Ungaro • Matteo Ungaro
4 votes
1 reply
1.1K views
How can I find all GO term IDs related to transcription factor?
go-term transcription-factor go gene-ontology tf
updated by Ram Ram • written by Chilly • Chilly
0 votes
1 reply
741 views
What's the difference between different quality control softwares?
qc trimomatic trim_galore
updated by GenoMax GenoMax • written by Pallondyle • Pallondyle
0 votes
1 reply
820 views
Simulating mRNA-seq data using VG - theoretical question
mrna-seq vg sim
updated by Jordan M Eizenga • Jordan M Eizenga • written by AshleeThomson • AshleeThomson
0 votes
0 replies
571 views
Determining SNP overlap of two different arrays
axiom snp array chip overlap
written by vannajhay • vannajhay
0 votes
0 replies
543 views
Feature name in Seurat metadata
seurat
written by Nicholas • Nicholas
0 votes
1 reply
722 views
Applying Regression on my dataset
variables correlation regression
updated by Raag • Raag • written by mrashad mrashad
0 votes
2 replies
844 views
Help Needed: Finding FASTA Sequences for Specific HIV Envelope Protein Subtypes
hiv-env-subtypes hiv-env genbank
written by mark.pekarsky • mark.pekarsky
0 votes
3 replies
1.6K views
Is ComBat not able to to handle only two batches? What are good alternatives?
combat batch correction
written by samuelandjw • samuelandjw
0 votes
0 replies
484 views
Merging 1000g with my data
merge plink1.9 genotyping-rate
written by curious_butterfly • curious_butterfly
0 votes
1 reply
1.4K views
p values, q values, stat.mean for gage() outputs - What to report and why?
gage pathway-analysis gsea r
updated by BioinfGuru BioinfGuru • written by jpvoth • jpvoth
0 votes
10 replies
2.5K views
Weird insert size distribution plot
adapter-trimming reads fastq insert-size
written by Ankit Ankit
0 votes
3 replies
1.1K views
plink2 giving multiple errors
plink2
updated by bk11 • bk11 • written by puneet • puneet
0 votes
1 reply
1.5K views
LigPlot (LigPlus) Giving Different Interactions on Command Line and GUI
python protein-protein-interaction structural-bioinformatics pdb
written by Aman Vishwakarma • Aman Vishwakarma
0 votes
1 reply
987 views
Understanding the Principle and Mechanism of K-mer Alignment in Bioinformatics
k-mers alignment
updated by GenoMax GenoMax • written by Dim • Dim
1 vote
5 replies
1.8K views
Nanopore Data Quality Check
qc fungi genome-assembly nanopore
written by SomeOne • SomeOne
0 votes
3 replies
1.2K views
Trouble Submitting Forms on Duet for Protein Stability using Web scraping technique (Requests and BeautifulSoup Packages)
web-scraping web-service protein python
updated by Ram Ram • written by Aman Vishwakarma • Aman Vishwakarma
0 votes
5 replies
19K views
Combine paired-end fastq files
next-gen-sequencing
updated by xiaoguang xiaoguang • written by 112498262 • 112498262
0 votes
3 replies
1.2K views
Is there any tool that can search for a pattern (while allowing mismatch) in fastq file?
next-generation-sequencing trimming-tools
updated by xiaoguang xiaoguang • written by Joshua • Joshua
0 votes
4 replies
1.3K views
Use alignment as reference genome to separate DNA from a mixed sample
human sequencing nanopore alignment
updated by GenoMax GenoMax • written by njornet • njornet
0 votes
1 reply
751 views
compare vg stat scores
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by aaaniich • aaaniich
0 votes
0 replies
548 views
BPGA analysis not generating all plots
bpga pan-genome
updated by Ram Ram • written by athira112athira • athira112athira
0 votes
4 replies
1.2K views
AWK script missing space after 3rd field
sfs awk angsd
written by MboiTui • MboiTui
0 votes
0 replies
644 views
Cannot Align My Consensus fasta
bcftools consensus alignment variant-calling
updated by Ram Ram • written by davidmaimoun • davidmaimoun
0 votes
4 replies
2.1K views
Should the amount of DNA input used for ChIP-seq library preparation be matched between the control and experimental groups?
chip-seq library-preparation
updated by ATpoint ATpoint • written by Ian • Ian
0 votes
4 replies
4.2K views
How to do Tajima's D analysis?
snp genome
updated by Mensur Dlakic Mensur Dlakic • written by amitgourav.ghosh12 amitgourav.ghosh12
0 votes
4 replies
6.0K views
Tajima's D Using SNP data ONLY
tajima's d snp
updated by xoaib • xoaib • written by aberry814 aberry814
0 votes
2 replies
7.4K views
Calculating Tajima's D for an individual genome vs. for population of genomes vs. for genes
tajima'sd target-of-selection population-genetics
updated by xoaib • xoaib • written by severalorks severalorks
0 votes
1 reply
1.7K views
Tajima's D calculation for specific genes in multi-sample VCF
neutrality genetics tajimad
updated by xoaib • xoaib • written by Muhammad • Muhammad
0 votes
5 replies
3.1K views
error from msigdbr
rna-seq msigdbr msigdb yeast
written by hamid.gaikani • hamid.gaikani
0 votes
1 reply
964 views
Many MAF files in tcga case
maf tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by Beowulf • Beowulf
0 votes
2 replies
1.2K views
Optimising False Positive Detection in NGS Pipelines Using Mapping and Base Quality Scores
basequalityranksumtest
written by ManuelDB ManuelDB
0 votes
6 replies
1.3K views
Variant Sampling programm
variant-sampler vsampler
written by berndmann • berndmann
0 votes
1 reply
606 views
RNA seq alignment issue
rna-seq
updated by Ram Ram • written by Hashan • Hashan
0 votes
1 reply
578 views
How to get all GO IDs of a specific GO term
go
updated by GenoMax GenoMax • written by jet • jet
0 votes
2 replies
1.3K views
How to use SNPlocs.Hsapiens.dbSNP150.GRCh38
twosamplemr snp gwas
written by learner__lin2003 • learner__lin2003
0 votes
0 replies
721 views
News: Online course on Reproducibility Data Analysis with R
r github git reproducibility docker
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.2K views
normalizing multiple conditions together or not
normalization edger
written by markus.glass • markus.glass
0 votes
4 replies
1.5K views
MACS2 for multiple conditions in ATACseq analysis
mac2
written by QX • QX
2 votes
1 reply
1.8K views
Right method to annotate genes on pangenome graph
pangenome vg
updated by colindaven colindaven • written by Quanyu • Quanyu
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