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0 votes
0 replies
670 views
How to plot phylogenetic tree(dendrogram) of mitochondria haplogroups?
phylogenetic haplogroups mtdna dendrogram
written by Karibu • Karibu
0 votes
6 replies
1.4K views
RNA seq mapping
rna-seq
updated by Ram Ram • written by mohamadhosein.shams1381 • mohamadhosein.shams1381
2 votes
14 replies
4.0K views
Proper reanotation of genepanel with snpEff and dbNSFP
vcf
written by Lukas • Lukas
0 votes
3 replies
2.0K views
Header too long for bam format
samtools alignments
updated by Ram Ram • written by selplat21 • selplat21
0 votes
2 replies
959 views
bam file: unmapped but matching reads (samtools view -f 4)
samtools bam
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Tommy • Tommy
0 votes
2 replies
1.3K views
Converting OMA IDs to Ensembl gene names
orthologs oma ensembl
updated by Ram Ram • written by Eric • Eric
1 vote
1 reply
935 views
Guidance on Reference-Based Assembly and Variant Analysis of Exome Sequencing Data
samtools bcftools genome wgs bwa-mem
updated by aw7 • aw7 • written by Rohan • Rohan
0 votes
1 reply
767 views
Linear regression models on non-linear dataset
correlation regression
updated by dthorbur dthorbur • written by mrashad mrashad
6 votes
0 replies
1.9K views
Tutorial: 6 tips to stay up to date for bioinformatics
bioinformatics computational-biology
updated by Ram Ram • written by Ming Tommy Tang Ming Tommy Tang
0 votes
4 replies
1.6K views
Nanopore cDNA sequencing - primary and complementary strand in one read
cdna nanopore
updated by GenoMax GenoMax • written by ovovo • ovovo
0 votes
3 replies
1.3K views
Can any one help me in intersect and merge in my correlation plot ?
corrplot rscript correlation
written by isha.lily20 • isha.lily20
1 vote
2 replies
1.4K views
Tools to call structural variants in haploid yeast from WGS data
structural-variants wgs yeast variant-calling
updated by clealk • clealk • written by Tasneem Fetian • Tasneem Fetian
0 votes
4 replies
1.2K views
RNA seq data for normal samples
rna-seq
updated by Raag • Raag • written by maryak • maryak
0 votes
5 replies
1.4K views
STAR cannot read fastq files
mapping star
updated by biofalconch biofalconch • written by spela.j • spela.j
0 votes
3 replies
1.3K views
Discrepancy between VCF and BAM file.
ngs bwa haplotypecaller gatk
updated by Ram Ram • written by franklin • franklin
0 votes
0 replies
425 views
deco: Decomposing Heterogeneous Cohorts using Omic Data Profiling
decorda
updated by Ram Ram • written by Ana • Ana
0 votes
1 reply
802 views
Gene Enrichment Analysis
gene-ontology enrichment go
updated by Ram Ram • written by BioGeek BioGeek
1 vote
1 reply
3.0K views
Lastz multi thread options
lastz alignment
updated by Ram Ram • written by BioGeek BioGeek
2 votes
14 replies
23K views
Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed Genes) to confirm results together- is it a good idea?
rna-seq r sequencing
updated by arnaud_p • arnaud_p • written by chokevin8 • chokevin8
0 votes
1 reply
1.3K views
extracting cell specific reads from cellranger BAM output file
bam cellranger seurat
updated by Ram Ram • written by singcell • singcell
0 votes
1 reply
988 views
PCA Genotyping rate 1000genome and own data
quality genotypingrate pca plink genomics
updated by LChart LChart • written by curious_butterfly • curious_butterfly
0 votes
2 replies
1.0K views
eQTL analysis for the same population in different status
eqtl
written by jlshi.nudt jlshi.nudt
0 votes
1 reply
1.8K views
Is there a way to calculate percent identity and percent similarity with Bio.Align?
biopython bio.align
updated by Joe Joe • written by Tom • Tom
0 votes
4 replies
1.3K views
To randomly generate a list of insertions and deletions
si
written by xmy1990 • xmy1990
0 votes
4 replies
1.7K views
Genome homology tool comparing two distance species
homology genome
updated by SanjidaR_NCBI • SanjidaR_NCBI • written by Chris • Chris
0 votes
4 replies
1.2K views
Duplication rate in FastQC report
fastqc
updated by GenoMax GenoMax • written by Ludmila • Ludmila
0 votes
0 replies
723 views
Command line Prophage detections tools
phages genomes bacterial
written by Rika • Rika
0 votes
0 replies
649 views
Diffbind: creating an affinity heatmap for clustering
diffbind
written by BT • BT
0 votes
3 replies
1.6K views
RNA-seq anlaysis > coding region vs. non coding region
non-coding coding rna-seq
updated by Shred Shred • written by maplewj • maplewj
0 votes
1 reply
770 views
Filtering Non-Homozygous and Non-Heterozygous Variants in DNA Analysis Pipeline
ngs
updated by Ram Ram • written by ManuelDB ManuelDB
0 votes
0 replies
637 views
Does Plink under perform ? ( GWAS )
snp gwas qq-plot plink
updated by GenoMax GenoMax • written by basnet.soren • basnet.soren
0 votes
4 replies
2.0K views
Seeking Guidance on Achieving Chromosome-Level Assembly for Insect Genome
insect scaffold contig chromosome
written by Dragn • Dragn
0 votes
0 replies
606 views
Annotated ribosome pymol file
ribosome structure pymol pse
written by noodle noodle
0 votes
2 replies
937 views
PopGenome stats for each population
popgenome
written by Yixuan • Yixuan
0 votes
6 replies
1.5K views
Is there any EnsEMBL 90 transcript annotations?
gtf cgat rna-seq
written by PK • PK
3 votes
0 replies
1.6K views
Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macos unix
updated by Ram Ram • written by Ming Tommy Tang Ming Tommy Tang
0 votes
2 replies
910 views
Error in GATK BaseRecalibrator
baserecalibrator gatk
updated by Ram Ram • written by Sarah • Sarah
0 votes
4 replies
1.4K views
VCFtools warning message
vcftools variant-calling
updated by Ram Ram • written by ashaneev07 • ashaneev07
1 vote
1 reply
1.1K views
Enrichr : how to provide background ?
enrichr
updated by GenoMax GenoMax • written by Sara • Sara
0 votes
1 reply
669 views
Why are polyA adaptors found in ATAC-seq reads?
atacseq
updated by ATpoint ATpoint • written by MIKA • MIKA
0 votes
1 reply
921 views
Extract significant DEGs using Seurat FindConservedMarkers and FindAllMarkers
findconservedmarkers seurat findallmarkers
updated by allingt • allingt • written by Jay • Jay
0 votes
0 replies
735 views
Workflow for functional analysis of differential gene core modules: KEGG, GSEA, and GO enrichment
gsea ppi-network enrichment-analysis kegg
written by mizzika • mizzika
0 votes
1 reply
1.3K views
HLA-HD tool for genomic imputation
bash imputation genomics
updated by Ram Ram • written by fra.r.silvestro • fra.r.silvestro
0 votes
1 reply
1.1K views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated by chrchang523 chrchang523 • written by _quantum_girl_ • _quantum_girl_
0 votes
12 replies
4.2K views
Troubleshooting RNA-seq data with DNA contamination
rna-seq deseq2 dna-contamination
updated by GenoMax GenoMax • written by DKA • DKA
0 votes
0 replies
548 views
How to get Characteristics Field From GEO using Entrez or FTP Website ?
ftp geo entrez
written by Kiefer • Kiefer
0 votes
2 replies
1.0K views
GSEA, RNA-Seq
gene-set-enrichment pathway
updated by Ram Ram • written by Rob • Rob
2 votes
6 replies
2.2K views
how to calculate correlations between sparse data
correlations
updated by Mensur Dlakic Mensur Dlakic • written by leranwangcs • leranwangcs
0 votes
1 reply
794 views
quary relted to ChIPpeakAnno & VennDiagram
r chip-seq
updated by rfran010 • rfran010 • written by Arbaz • Arbaz
0 votes
0 replies
624 views
protein-ligand complex study in liposome
docking cheminformatics md-simulation
updated by Ram Ram • written by Noor • Noor
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