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3 votes
5 replies
2.7K views
Forum: Books and Blogs guiding the programming practice in bioinformatic research?
r python programming
written by JustinZhang 14
0 votes
1 reply
748 views
Assembly of chloroplast genome from plant WGS
plant assembly chloroplast illumina wgs
updated by GenoMax 16K • | written by adarsh 8
0 votes
5 replies
1.6K views
Combining Overlapping ATC Code Usage in R
r pharmacogenetics
written by d.s.zimmerman 0
0 votes
0 replies
858 views
News: Intro to Linux for Genomics Online Course
linux workshop genomics
updated by Ram 4.5K • | written by Kat @ EdGe 1
0 votes
7 replies
2.3K views
BUSCO v3 eukaryotic database
genome assembly busco
updated by GenoMax 16K • | written by ccruz 0
0 votes
0 replies
1.3K views
Somatic variant filtering necessary files
getpileupsummaries
written by Anitha 1
0 votes
0 replies
470 views
Blog: Posey Lab: Beyond Replication with scRNA-seq Analysis in g.nome®
software platform
updated by Ram 4.5K • | written by Shikha Sanghvi 0
0 votes
1 reply
840 views
Testing for specific genes of whole RNA Sequencing
r deseq2 sequencing rna
updated by ATpoint 9.1K • | written by hagl 2
0 votes
3 replies
1.1K views
RNA seq data analysis
rna-seq
updated by Ram 4.5K • | written by mohamadhosein.shams1381 0
0 votes
11 replies
2.0K views
Use R to Produce CpG Information
r cpg
written by Dana 0
0 votes
0 replies
830 views
Job: Researcher (m/w/d) in Data Management and Bioinformatics - LIED AG Prof. Busch
data management researcher
written by alwayshope 4
1 vote
4 replies
1.7K views
Need help with design/workflow please?
deseq2 batch workflow
written by BioinfGuru 214
0 votes
0 replies
648 views
News: Course: Structural Variant Detection and Comparison
structural-variants svs nanopore
written by Physalia-courses 281
0 votes
0 replies
687 views
News: Course: Transform your data into an interactive web app with R Shiny
rshiny dataviz course
written by Transmitting Science communication 7
0 votes
1 reply
737 views
What may cause my z-score-FDR distribution
fdr z-score crispr_screen
updated by ATpoint 9.1K • | written by Pallondyle 0
0 votes
4 replies
1.2K views
How can I find fasta sequences for gp120 and gp41?
gp41 gp120 subtypes hiv env
written by mark.pekarsky 2
0 votes
5 replies
1.4K views
Pcoa plot
pcoa
updated by jared.andrews07 1.9K • | written by tolulope 0
0 votes
10 replies
2.5K views
Low mapping rate using SALMON
rna-seq
updated by GenoMax 16K • | written by Pegasus 13
0 votes
3 replies
2.0K views
If TPM is not comparable across cohorts, can it be used as the input for ML models if we have RNASeq data from multiple cohorts?
tpm rna-seq machine-learning
updated by LChart 518 • | written by ivicts 1
0 votes
1 reply
2.8K views
Demultiplex fastq sequences based on sequence header
demultiplexing barcodes fastq nanopore
updated by GenoMax 16K • | written by ja569116 0
0 votes
0 replies
605 views
News: course on Generalized Linear Mixed Models in R
r dharma mixed-models gllm
written by Physalia-courses 281
0 votes
0 replies
1.1K views
Job: Computational/Bioinformatics Solutions for CRISPR Screening
cro
updated by GenoMax 16K • | written by Friyunnwoo 2
0 votes
6 replies
2.2K views
How to convert .sdf files into .sdf.gz?
file-conversion
written by Sanjukta 0
1 vote
0 replies
1.1K views
News: Core_nt: new default database for NCBI nucleotide BLAST
core_nt ncbi blastn
written by EricS_NCBI 1
0 votes
3 replies
2.8K views
Cibersort input data
cibersort
updated by DareDevil 448 • | written by Maryam 0
0 votes
2 replies
1.1K views
homo sapiens VCF
alignment homo-sapiens vcf
updated by Ram 4.5K • | written by Sanazarghami4444 0
0 votes
0 replies
611 views
News: Check Out Our New Desktop App for scRNA-seq Data Analysis – Beta Testers Wanted!
scrnaseq
written by OmnibusX 13
0 votes
2 replies
1.6K views
Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
sureselect hg38 wes sv
written by George 3
0 votes
2 replies
938 views
Finding gtf file for safflower
gtf safflower
written by Bushra Bibi 8
0 votes
8 replies
4.0K views
Help in Log2 transform CPM count
r edger dge deseq2
updated by Ram 4.5K • | written by G.S 6
0 votes
1 reply
1.1K views
Job: Postdoctoral Fellow in Machine Learning for Neuroimaging Genomics at University of Otago – Dunedin, New Zealand
human-genomics machine-learning neuroimaging
written by narun.pat 0
0 votes
1 reply
891 views
How to make local BLAST sequentially look through a large number of databases and generate a file for each
blast
updated by GenoMax 16K • | written by nipayrhk 0
0 votes
1 reply
2.7K views
Problems with overlapping variants in a vcf file
bcftools variant vcf
updated by Ram 4.5K • | written by Buxus 1
2 votes
1 reply
1.1K views
Removing / Excluding / Collapsing Overlapping Indels
bcftools genome vcf genotyping gatk
written by jon.klonowski 21
0 votes
5 replies
2.7K views
GATK SelectVariants consider spanning/overlapping deletions as SNP
selectvariants snp gatk indel
updated by jon.klonowski 21 • | written by cocchi.e89 30
0 votes
1 reply
650 views
Contrasting multiple tissues in DiffBind
diffbind chip-seq
updated by Ram 4.5K • | written by aaron.varghese 0
0 votes
1 reply
823 views
Common SNP/variome-aware restriction digest generator for human genome
variome snp restriction-enzyme
updated by Ram 4.5K • | written by hurfdurf 49
0 votes
4 replies
4.7K views
Create Seurat Object from matrix and two text files
single-cell rna-seq seurat
updated by blackbruce0405 1 • | written by Sky 1
0 votes
3 replies
1.2K views
Confusion during BARCODE MATCHING.
primers metagenomics barcode
updated by GenoMax 16K • | written by Buket 0
0 votes
1 reply
1.8K views
Creating a signature matrix using CibersortX
cibersortx deconvolution
updated by jared.andrews07 1.9K • | written by Aspire 43
0 votes
2 replies
2.3K views
Plotting LD heat map with plink.ld result
r
written by selplat21 2
1 vote
0 replies
854 views
What exactly is Biopython's alignment.score variable?
biopython
written by Tom 5
1 vote
0 replies
535 views
What happens to M-phase cells in single nucleus RNA-seq?
10x multiome snrnaseq
written by mpiersonsmela 2
0 votes
4 replies
2.3K views
Interpretation of PRS scores calculated from PGS Catalog
prs pgs-catalog
updated by UnivStudent 44 • | written by Patrick 3
0 votes
4 replies
1.3K views
Expression quantification = how is it possible that the amount of sequenced reads assigned to a specific gene/transcript
rna-seq quantification
updated by Bastien Hervé 680 • | written by mairena.hirschberg 0
0 votes
1 reply
870 views
Polygenic risk score percentile cutoff
gwas odds beta
updated by UnivStudent 44 • | written by endoplasmicreticulum12 0
0 votes
1 reply
2.0K views
Calculating PRS from pre-computed PGS Catalog
gwas prs pgs
updated by UnivStudent 44 • | written by user230613 38
0 votes
1 reply
865 views
QC for UKB GWAS data
ukb gwas qc
updated by bk11 312 • | written by Mahnaz 0
8 votes
9 replies
44K views
How To Extract Set Of Reads From Fastq (Or Eventually Fasta And Qual) Based On List Of Ids?
extraction read 454 fastq fasta
updated by GenoMax 16K • | written by Biomonika (Noolean) 323
0 votes
0 replies
698 views
Can a Binary Signature Matrix Be Used in CIBERSORT for Deconvolution?
regression svm cibersort svr
written by DareDevil 448
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