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0 votes
4 replies
2.2K views
Reliable method to detect 10x single-cell chemistry?
10x
written by morovatunc morovatunc
0 votes
1 reply
682 views
Multiple annotation in my table counts
rna-seq rna microrna mirnas
written by omicon • omicon
0 votes
8 replies
3.1K views
Downloading RNAseq datasets from GEO into R
geodatabase transcriptomic
written by Alana • Alana
0 votes
0 replies
386 views
I can not see the intron region aligned to ref in IGV from ONT direct RNA sequencing
nanopore
written by Zhen • Zhen
0 votes
3 replies
931 views
Console BLAST search in WGS/TSA databases
blast
updated by Ram Ram • written by NK • NK
1 vote
1 reply
1.8K views
Error at phase 4 when running GeMoMa (homology-based annotation)
homology gemoma annotation genome
updated by asd63zhengzeyu • asd63zhengzeyu • written by bbscience • bbscience
4 votes
4 replies
2.7K views
How to perform reciprocal best hit (RBH) when there are multiple versions of a protein sequence
reciprocal.best.hit protein sequence rbh blast
updated by LChart LChart • written by Chilly • Chilly
0 votes
2 replies
1.4K views
No boxplots on my FastQC report
fastqc
updated by ATpoint ATpoint • written by sara.vandenbosch • sara.vandenbosch
0 votes
0 replies
456 views
GDCRNATools: error in the gdcRNAMerge function
r gdcrnatools studior gdcrnamerge
written by Azra • Azra
0 votes
0 replies
889 views
Job: Available Bioinformatics PhD Position at the Med Uni Graz, Austria
data-analysis phd transcriptomics medicine
updated by Ram Ram • written by Julia Feichtinger • Julia Feichtinger
0 votes
1 reply
1.1K views
merge replicate for bigWig files from macs2 peak calling
atac-seq
updated by ATpoint ATpoint • written by QX • QX
0 votes
0 replies
426 views
vg autoindex (Variant with '.' among multiple alts being skipped)
vg
written by yixing • yixing
0 votes
2 replies
1.1K views
the reference used in Cuffcompare(GENCODE, RefSeq)
gencode rna-seq cuffcompare refseq
written by ZZOYEA • ZZOYEA
0 votes
2 replies
907 views
BWA-MEM PARAMETER TO DETECT MUTATION
bwa bwa-mem bwa
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Bhawna • Bhawna
0 votes
2 replies
732 views
Source code of metaCV
metagenomics metacv
written by yeah • yeah
0 votes
2 replies
1.4K views
not centered volcano plot, Seurat
r volcano singlecell seurat
written by sooni • sooni
0 votes
1 reply
749 views
Blast BRAKER output
braker blast
updated by GenoMax GenoMax • written by Tom Brady • Tom Brady
0 votes
1 reply
928 views
How to identify fastq source - Illumina or ONT?
ont illumina fastq
updated by GenoMax GenoMax • written by ChillarAnand • ChillarAnand
1 vote
6 replies
2.7K views
advice for visualizing a graph genome constructed by "vg construct"
vg
written by Jong • Jong
0 votes
2 replies
1.0K views
NCBIWWW.qblast returning empty XML
ncbiwww qblast blast biopython bio.blast
written by brandon • brandon
0 votes
0 replies
726 views
News: Course - RNA-Seq Analyses in Non-Model Organisms (online)
bioconductor non-model-organisms nanopore pacbio rna-seq
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
11 replies
2.3K views
Why do I have * in my FASTA? g2gtools diploid
g2gtools rnaseq fasta genome transcriptome
written by jon.klonowski jon.klonowski
0 votes
0 replies
552 views
Automatically annotate gene loci
reference-genome scrna-seq gene-annotation
updated by Ram Ram • written by rtrende • rtrende
0 votes
4 replies
1.9K views
One SRR (one fastq) file for pair-end layout
srr paired-end sra
written by Vojtěch • Vojtěch
2 votes
6 replies
3.6K views
0 Features for COVID-19 ExpressionSet through GEOQuery
rna-seq r geoquery
updated by Sean Davis Sean Davis • written by arjuncsubra • arjuncsubra
2 votes
5 replies
2.4K views
Tool: ggalign: alternative to ComplexHeatmap, a ggplot2 extension for complex heatmap and marginal plots.
ggplot2 heatmap
written by Yun • Yun
0 votes
1 reply
757 views
Genes of Interest in a Multi-Tissue Analysis
vst dge deseq2
updated by allingt • allingt • written by Gabriel • Gabriel
0 votes
1 reply
1.0K views
Generate PSSM using HMMER
hmmer
updated by Mensur Dlakic Mensur Dlakic • written by jet • jet
0 votes
2 replies
1.3K views
Inlfated QQ plot GWAS
gwas
updated by LauferVA LauferVA • written by Pedro • Pedro
0 votes
10 replies
9.5K views
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
vcftools vcf
updated by Ram Ram • written by mayara.salvian • mayara.salvian
0 votes
18 replies
3.7K views
Submitting a job in parallel on slurm
bam slurm shell parallel
updated by rfran010 • rfran010 • written by Arthur • Arthur
0 votes
1 reply
699 views
WGS variant filtering for exome
wes snp strelka freebayes wgs
updated by Pierre Lindenbaum Pierre Lindenbaum • written by isMM • isMM
0 votes
3 replies
1.0K views
Change of cell proportions or differential expression?
deconvolution differential-expression
written by Aspire Aspire
0 votes
7 replies
2.4K views
I encountered a problem while using Mageck to analysis CRISPR screen data
mageck crispr-screen
updated by GenoMax GenoMax • written by Pallondyle • Pallondyle
0 votes
9 replies
2.8K views
How do I find allele frequencies from GATK output?
allele-frequency gatk muller-plot
updated by 2nelly 2nelly • written by mgranada3 • mgranada3
1 vote
2 replies
1.5K views
What are the WES-specific settings when running GATK's variant recalibration step?
wes gatk recalibration exome
updated by GenoMax GenoMax • written by Joel Wallenius Joel Wallenius
0 votes
3 replies
7.0K views
Remove column from Seurat metadata
single-cell transcriptomics cell-type-annotation rnaseq
updated by ev97 • ev97 • written by gorizwango • gorizwango
0 votes
3 replies
1.1K views
Difference in depth of coverage between SNIPPY and in-house script
ngs
updated by GenoMax GenoMax • written by Sudheer Gupta • Sudheer Gupta
1 vote
0 replies
717 views
how to perform QTL analysis and how to integrate multi-omit datasets
r statistics genetics
written by Bioinfonext Bioinfonext
0 votes
1 reply
1.7K views
How to annoate the probe id to genes in Affymetrix Human Gene 2.0 ST Array [transcript (gene) version ?
biomart geo microarray annotation
updated by ultraanfibio • ultraanfibio • written by DareDevil DareDevil
1 vote
4 replies
2.9K views
GSEA vs GO-enrichemnt analysis
rna-seq
written by Pegasus • Pegasus
0 votes
1 reply
797 views
How To Get Millions of Sequences from Genomic Regions Efficiently
python pandas genome
updated by Ram Ram • written by Yacob • Yacob
1 vote
0 replies
583 views
dbNSFP in-silico predictor results counts not-equal to number to alternatives in vcf file
vcf
written by Lukas • Lukas
0 votes
5 replies
2.6K views
DEGs vs WGCNA: What am I really looking at?
deseq2 rna-seq deg wgcna
written by christiantd • christiantd
0 votes
1 reply
770 views
Feature selection for normalized RNA-seq data
feature-selection rna-seq
updated by pinheirofabiano • pinheirofabiano • written by leila • leila
0 votes
3 replies
1.4K views
How to convert h5ad object to rds object without raw counts?
h5ad
updated by yura.grabovska • yura.grabovska • written by hejenny792 • hejenny792
1 vote
2 replies
2.8K views
Subsetting cells from a previously integrated Seurat dataset (scRNA-seq)
subclustering scrna-seq seurat
updated by heidenreich.ac • heidenreich.ac • written by Song • Song
0 votes
3 replies
1.3K views
Check if a BAM file is corrupt in Java
bam java
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Bertalan_Takacs • Bertalan_Takacs
0 votes
4 replies
2.6K views
Cannot download BUSCO datasets
busco
written by JenI • JenI
0 votes
1 reply
1.4K views
Unable to Upload a .txt file into GSEA
txt dataset gsea expression
updated by GenoMax GenoMax • written by BUB1 • BUB1
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