This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
1 reply
702 views
News: A Practical Hands-On Introduction to R
tidyverse r data-visualisation data-analysis ggplot2
updated by noze • noze • written by Physalia-courses Physalia-courses
0 votes
0 replies
653 views
Low demultiplex yield
gbs demultiplex adapterremoval axe
written by Steven • Steven
0 votes
2 replies
1.3K views
Where to find open access data of SNP arrays to perform GWAS
illumina humanomni affymetrix 550k
written by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar
0 votes
1 reply
918 views
unmapped reads Kallisto bulk RNA-seq
kallisto rna-seq unmapped-reads
updated by Ram Ram • written by Irene • Irene
0 votes
4 replies
2.5K views
vg: How to find node Position and source(sample) ?
vg
written by zhang yi xing • zhang yi xing
0 votes
6 replies
2.6K views
which bed file should be used for deeptools computeMatrix
atac-seq deeptools
updated by Ming Tommy Tang Ming Tommy Tang • written by QX • QX
0 votes
6 replies
1.7K views
Last against ncbi nr database
metagenomics virus alignment
written by Md Moinuddin • Md Moinuddin
0 votes
1 reply
900 views
DESeq2 analysis of a chromosome region
gene-expression rna-seq deseq2
updated by BioinfGuru BioinfGuru • written by Aron • Aron
0 votes
3 replies
1.3K views
Approaches to validate hits from CRISPR-screen in mice
crispr screen mice mageck
updated by jared.andrews07 jared.andrews07 • written by GLG • GLG
0 votes
5 replies
1.8K views
Different strandedness from HISAT2 and STAR alignment
star strandedness rna-seq alignment hisat2
written by tianshenbio tianshenbio
0 votes
2 replies
2.0K views
Clarification on Reference Version in GATK Resource Bundle
gatk hg38 resource bundle
written by George • George
0 votes
1 reply
2.0K views
Tutorial: How to install R and Rstudio on macOS with M3 chip
rstats computational-biology
updated by Ram Ram • written by Ming Tommy Tang Ming Tommy Tang
0 votes
0 replies
646 views
Substraction of GO terms to the whole ontology
terms ontology go
written by Francois Piumi • Francois Piumi
0 votes
2 replies
715 views
Human Genome
genome
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Ahmed • Ahmed
0 votes
0 replies
856 views
Convert Illumina Final Report.txt file into PLINK input files (.fam, .lgen, .ped etc)
plink
written by Alexandros.Frydas • Alexandros.Frydas
0 votes
4 replies
1.6K views
What software and specific output files should I use to generate graphs from my Flye assembly??
pacbio galaxy-server flye
updated by GenoMax GenoMax • written by hashim.rana11 • hashim.rana11
0 votes
10 replies
2.3K views
Using featureCounts on HISTA2 aligned data for the tomato genome
hisat2 genome featurecounts alignment
written by duplessisantzel • duplessisantzel
0 votes
0 replies
589 views
Methylation count matrix METABRIC
m-values beta-values methylation metabric
updated by Ram Ram • written by mewmewmew • mewmewmew
0 votes
3 replies
1.1K views
DEG with several conditions
r gene-expression deseq2 rna-seq
updated by BioinfGuru BioinfGuru • written by Kylie • Kylie
0 votes
4 replies
4.3K views
Aspera ascp Command Fails with "Failed to open TCP connection for SSH" Error
aspera
updated by Michael Dondrup Michael Dondrup • written by Akansh • Akansh
1 vote
11 replies
4.2K views
why R scripts are preferred to biopython for RNA-Seq analyses?
r python
updated by dariober dariober • written by pinheirofabiano • pinheirofabiano
0 votes
7 replies
3.8K views
space converted into dots in header name
r rstudio microbiome
updated by cpad0112 cpad0112 • written by Bioinfonext Bioinfonext
0 votes
2 replies
1.0K views
What tool is best to build plasmid using a reference sequence?
assembly reference wgs
written by blur blur
0 votes
2 replies
1.5K views
Tool to align metagenomic data to reference genome
metagenomics alignment
updated by colindaven colindaven • written by Madde • Madde
0 votes
0 replies
621 views
CRISPR pooled screening analysis: STARS analysis 'between the groups'
crispr pooled-analysis screening
updated by Ram Ram • written by Yummi Lee • Yummi Lee
0 votes
1 reply
1.4K views
How to find p-value in Cytoscape in network analysis?
analyzation ppi network cytoscape
updated by Scooter Scooter • written by Tiara • Tiara
0 votes
4 replies
3.3K views
Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and antismash tools on multiple samples at once to speed up run time?
bash parallel-processing deeptools
updated by Ming Tommy Tang Ming Tommy Tang • written by Zach G • Zach G
0 votes
0 replies
562 views
Interpreting COG distribution
cogclassifier genomes cog bacterial
written by dlera.lozano • dlera.lozano
0 votes
3 replies
1.1K views
Not all available files shown in TCGA website.
tcga
written by biock • biock
0 votes
0 replies
625 views
Consistent somatic CNV calling across samples: spurious, error or real?
manta cnvkit sv somatic cnv
updated by GenoMax GenoMax • written by avelarbio46 • avelarbio46
0 votes
2 replies
925 views
Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mutations
snps germline somatic gatk
written by George • George
1 vote
0 replies
739 views
Tool: OpenCRAVAT - Your Open Source Solution for Variant Annotation!
variant-annotation genomics
updated by Ram Ram • written by OpenCRAVAT • OpenCRAVAT
0 votes
2 replies
1.2K views
BUSCO analysis error
busco
written by Shakunthala Natarajan • Shakunthala Natarajan
1 vote
2 replies
1.2K views
Is there a database for housekeeping genes?
normalisation rna-seq ruvseq housekeeping-genes
written by BioinfGuru BioinfGuru
0 votes
0 replies
540 views
Selection statistics help
statistics genome selection
updated by Ram Ram • written by Jack • Jack
0 votes
0 replies
508 views
The discrepancy between the bowtie2 alignment summary and the samtools flagstat
bowtie2 alignment summary
updated by GenoMax GenoMax • written by daffodil • daffodil
0 votes
1 reply
1.2K views
Analysis of Illumina Infinium MethylationEPIC v2.0
methylationepic infinium
updated by fmueller • fmueller • written by ramiro.barrantes • ramiro.barrantes
0 votes
2 replies
1.0K views
Query regarding the ST visulization
visualization circos sequence
written by Jaykumar • Jaykumar
0 votes
0 replies
566 views
LD block
linkage-disequilibrium ld-block ld
updated by Ram Ram • written by UPO • UPO
0 votes
8 replies
1.9K views
using parallel on samtools view
samtools parallel
updated by michael.ante michael.ante • written by chictu • chictu
0 votes
0 replies
920 views
How to choose the minGSsize and maxGSsize parameters in clusterProfilers GSEA
r clusterprofiler gsea
written by edoardofilippi1998 • edoardofilippi1998
0 votes
0 replies
391 views
qPRO-Seq analysis
qpro
written by daffodil • daffodil
0 votes
0 replies
679 views
reference-point setting from computeMatrix
atacseq
written by QX • QX
0 votes
2 replies
1.0K views
Issues with Minimap2 and ONT (Nanopore)
minimap nanopore
written by pixie@bioinfo pixie@bioinfo
0 votes
0 replies
532 views
which distance used for kmeans in deeptools plotHeatmap
atac deeptools
written by QX • QX
0 votes
2 replies
1.1K views
How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated by Pierre Lindenbaum Pierre Lindenbaum • written by DareDevil DareDevil
0 votes
6 replies
2.1K views
Geometric optimization following amino acid substitution in PyMol
geometric-optimization pymol
written by Hansen_869 • Hansen_869
0 votes
0 replies
500 views
Function for Cancer Multi-omic Integration Function in Database
multiomic database oncogene integration cancer
written by minsu1794 • minsu1794
0 votes
0 replies
541 views
StringTie Parameters for Yeast
gffcompare nanopore stringtie rnaseq
written by kyusikkim • kyusikkim
104 votes
94 replies
276K views
Tools To Calculate Average Coverage For A Bam File?
coverage bam sequencing
updated by GenoMax GenoMax • written by Biomed Biomed
Recent Votes
Recent Locations
Recent Replies