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1 vote
2 replies
1.5K views
R package to visualize multiple aligned chromatograms
r plot chromatogram sanger
written by DaniCee 2
0 votes
3 replies
1.3K views
issue with terms label in Go dotplots
r clusterprofiler go-terms
written by G.S 6
0 votes
0 replies
581 views
BCftools call when using -v -V indels vs using -V indels only
bcftools plink
written by Jimmy M 0
0 votes
5 replies
1.6K views
How to make the length of the CDS of my bed file divisible by 3?
annotation cds toga bed
updated by Michael Dondrup 5.6K • | written by blumina.r 0
0 votes
0 replies
765 views
News: Course: Introduction to the Analysis of Longitudinal Data in Biology Using R
longitudinal-data r epidemiology forecasting gene-expression
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
8 replies
2.8K views
p-value/adjusted p-vlaue cutoff
adjusted-pvalue p-value deseq2 fgsea
updated by Jean-Karim Heriche 2.7K • | written by alex.kang1014 0
0 votes
1 reply
1.1K views
bamCoverage - how BPM normalization was done?
bamcoverage chip-seq deeptools
written by Pei 26
0 votes
0 replies
500 views
Help needed to troubleshoot : conversion error with open babel on cmd
open-babel
updated by Ram 4.5K • | written by Sanjukta 0
0 votes
0 replies
669 views
No MAF filtering for GWAS
gwas
updated by Ram 4.5K • | written by K Lee 2
0 votes
4 replies
1.5K views
DNA SPRITE Expirment Benchmark
sprite genome
updated by Ram 4.5K • | written by Amaal 0
0 votes
5 replies
2.0K views
Centrifuge Index creation issue
metagenomics centrifuge
written by skbrimer 74
0 votes
6 replies
2.0K views
Non-existent transcript as a result from Salmon
rnaseq salmon
written by Vojtěch 1
1 vote
1 reply
1.1K views
How to calculate differentially spliced genes in single cell?
scrna velocyto splicing scvelo
updated by ATpoint 9.1K • | written by zeina 1
0 votes
2 replies
946 views
Basic coding-Stuck with Java script while working with KNIME
java
written by Sanjukta 0
2 votes
2 replies
1.3K views
How can we determine or find the insertion time of Numts?
pacbio bioinformatician mtdna numts
written by hashim.rana11 4
1 vote
5 replies
5.1K views
Differential expression Analysis of PacBio Isoseq data
differential-expression-analysis isoseq
written by tvibhaps 1
0 votes
1 reply
907 views
Book about RNA structure
rna
updated by Mensur Dlakic 3.0K • | written by bef1 0
0 votes
2 replies
955 views
eagle: error: argument command: invalid choice: 'DATASET_chr_for_phasing.vcf.gz' (choose from 'interface', 'convert')
gwas-imputation
written by nareshmvr 1
0 votes
0 replies
777 views
whatshap ploidy error on female sample
ont ploidy phasing nanopore
updated by Ram 4.5K • | written by eebloom 11
0 votes
0 replies
712 views
ROSE analysis is empty
chip-seq h3k27ac rose
written by pb11 3
1 vote
0 replies
571 views
Seeking Advice on Protein Evidence for GALBA Annotation of Non-Model Rodent Genome
annotation galba maker genome breaker
written by aleponce 0
0 votes
4 replies
3.2K views
difference between macs2 callpeak using bam and bed file
macs2 atac-seq
written by QX 9
0 votes
1 reply
818 views
Reference source that provides IRIs for Ensembl gene IDs?
ensembl iri
updated by GenoMax 16K • | written by nkabo 8
0 votes
1 reply
1.1K views
Can i use population as a trait to perform GWAS?
hapmap plink gwas qc
updated by dthorbur 350 • | written by Yugan Gogul Muthukumar 3
0 votes
15 replies
5.0K views
How to give 2 input files (one from the process before and one from 3 processes before) in nextflow pipeline?
nextflow nf-core processes channels
updated by colindaven 844 • | written by giulia.trauzzi 3
0 votes
0 replies
574 views
Should I plot with methylDiff or methylBase object?
methylkit
written by CTLong 14
0 votes
5 replies
2.5K views
Differential gene expression (aiming to create heatmap) for raw RNAseq count data from different publications - how to?
r deseq2 differential-expression
updated by BioinfGuru 214 • | written by Leah 0
1 vote
18 replies
5.4K views
Forum: Is "training", fine tuning, or overfitting on "external independent validation datasets" considered cheating or scientific misconduct?
tools scientific misconduct overfitting
written by ivicts 1
0 votes
5 replies
1.9K views
call peak for all replicates in all conditions using macs2
macs2 atacseq
updated by zau saa 15 • | written by QX 9
0 votes
0 replies
885 views
Are equal whisker lengths important in an RLE plot?
eda plot rnaseq edaseq rle
written by BioinfGuru 214
0 votes
4 replies
1.4K views
trimming 151bp to shorter k-mer in ATAC-seq analysis
atac-seq
written by QX 9
6 votes
15 replies
56K views
Get chromosome sizes from fasta file
genome ucsc
updated by Dave Carlson 223 • | written by rioualen 75
6 votes
20 replies
89K views
Sequence length from Fasta
fasta
updated by Diogenes 0 • | written by bongbang 9
0 votes
3 replies
2.1K views
Merged Reference Panel using WES data
sequencing imputation reference
updated by GenoMax 16K • | written by shamav523 0
7 votes
4 replies
6.3K views
Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
updated by codingzombie 0 • | written by Kevin Blighe 9.0K
0 votes
0 replies
560 views
How can I visualise the gene order for fungal mitogenomes?
mitogenome fungal genomics
written by madders73 1
0 votes
3 replies
1.3K views
flipped BAM files in IGV after STAR aligner
igv aligner star bam rna-seq
updated by rfran010 174 • | written by veronicam 0
1 vote
2 replies
1.7K views
Integration of scRNA-seq datasets from different tissues
scrna-seq
updated by OmnibusX 13 • | written by Immreg 1
0 votes
3 replies
1.5K views
Canu Nanopore Genome assembly optimization
slurm assembly genome canu nanopore
updated by Dave Carlson 223 • | written by SomeOne 33
0 votes
3 replies
1.4K views
Relative abundance of plasmid DNA content in each sample
illumina e.coli wgs
written by adarsh 8
0 votes
0 replies
582 views
Tool: TCGA-DDR: A tool for Survival and Genomic feature analysis
damage ddr tcga dna survival
written by camelia.mocanu 0
0 votes
2 replies
1.5K views
How to fix this error while performing QC in PLINK "Warning: 228 het. haploid genotypes present"
hapmap plink gwas qc
written by Yugan Gogul Muthukumar 3
0 votes
2 replies
913 views
Remove specific reads from a metagenomic sequencing run
metagenomics
updated by colindaven 844 • | written by SushiRoll 14
0 votes
1 reply
731 views
How can you separate and ignore the expression changes caused by single cell isolation from the single cell transcriptome ?
cell single trancriptome
updated by dsull 781 • | written by lidasoltani2050 0
0 votes
4 replies
1.6K views
EdgeR gmlQLF with low number of genes
edger dge pseudobulking
updated by Gordon Smyth 916 • | written by merdanosman 0
0 votes
0 replies
847 views
Job: Senior Scientist position (m/f/d) computational biology/bioinformatics at UKSH Prof. Martin Kircher
bioinformatics genomics
written by alwayshope 4
0 votes
3 replies
1.6K views
How to generate GFF3 or GTF files for a custom reference.
gff3 gtf
updated by Ram 4.5K • | written by SDVelivela 0
0 votes
6 replies
2.2K views
Batch correction for RNA-seq using ComBat-seq for same group and batch
sva combat_seq combat deseq2 rna-seq
written by botloggy 1
0 votes
5 replies
1.7K views
Any recommended way to share ChIP track to collaborator through UCSC browser without using local FTP?
chip-seq ucsc-genome-browser
written by Pei 26
0 votes
2 replies
1.7K views
topGO R package - how to account for fold expression and p value
r proteomics topgo enrichment
written by Sven 0
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