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0 replies
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News: EMBO Practical Course Measuring translational dynamics by ribosome profiling
emboriboprof
written by EMBL Events 2
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0 replies
811 views
News: EMBL Conference The expanding world of RBPs: from posttranscriptional control to riboregulation
emblrbp
written by EMBL Events 2
1 vote
0 replies
735 views
News: EMBL Course Computing skills for reproducible research: software carpentry
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updated by Jean-Karim Heriche 2.7K • | written by EMBL Events 2
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700 views
News: Course: Project Structure for Reproducible Work
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updated by Ram 4.5K • | written by filip.buric 1
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normalization in single cell
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updated by Bastien Hervé 680 • | written by kayah 2
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1 reply
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How to Visualize ATAC-seq Peaks with Transcription Factor Binding Sites Using IGV
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updated by Bastien Hervé 680 • | written by giegie 0
0 votes
0 replies
747 views
News: Coding Courses @ Edinburgh Genomics
snakemake python r workshop linux
written by Kat @ EdGe 1
0 votes
0 replies
559 views
Digital Pathology feature pooling methods
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updated by Ram 4.5K • | written by Eren 0
0 votes
3 replies
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How to download NCBI's Identical Protein Group (IPG) database
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updated by Irsan 783 • | written by Peter 0
1 vote
2 replies
2.3K views
pathview - cannot open URL : HTTP status was '403 Forbidden'
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updated by lianchee11 7 • | written by Itamar 1
0 votes
1 reply
917 views
Sorting DEGs in the dotplot for every column
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updated by Bastien Hervé 680 • | written by ashkan 16
1 vote
1 reply
1.4K views
How can I convert a .sqn file to .gbk
genbank
updated by michael.ante 408 • | written by madders73 1
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3 replies
1.3K views
Unable to remove duplicate sequences
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updated by michael.ante 408 • | written by juanluis0516 0
0 votes
3 replies
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remove duplicates in Nanopore cDNA PCR data
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updated by jeevii 0 • | written by 静 0
0 votes
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ST: clustering on each tissue section separately or clustering on all tissue sections combined in Anndata object
spatial-transcriptomics squidpy scanpy
updated by OmnibusX 13 • | written by Genomancer 0
0 votes
2 replies
1.6K views
Only two fastqs for 10X scATAC-seq data deposited on GEO database.
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written by 1048686151 0
0 votes
3 replies
2.5K views
IGV and display of amino acid translations
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updated by Ram 4.5K • | written by sk 0
0 votes
0 replies
479 views
Using Arriba on single cell data set (scRNA-seq)
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written by sogand 0
0 votes
2 replies
1.3K views
Obtaining clinical data from the TCGA data portal
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written by elisheva 12
0 votes
0 replies
532 views
Encoding protein sequences based on catalytic residues
of functional proteins annotation
updated by GenoMax 16K • | written by Nilavrah 0
1 vote
6 replies
1.9K views
Download files from Experiment Acession
bioproject ncbi sra
written by Manuel Sokolov Ravasqueira 12
0 votes
0 replies
740 views
Generate the snpfile.txt (for BLUPF90 input) in 0125 format from plink flat file (.map and .ped)?
genotype blupf90 plink
updated by GenoMax 16K • | written by tvibhaps 1
0 votes
6 replies
2.5K views
Associate Roary output with locus_tag from specific genome
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updated by Joe 2.2K • | written by jennahamlin 0
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5 replies
1.8K views
Segmentation fault PLINK 1.90b
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updated by chrchang523 1.1K • | written by Alexandros.Frydas 3
0 votes
6 replies
3.6K views
ROSE called super-enhancers overlapping with promoters
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updated by jared.andrews07 1.9K • | written by os306 1
0 votes
0 replies
1.1K views
Job: Bioinformatics Analyst - Laboratory Medicine and Pathology
job
written by toddknutson 6
0 votes
2 replies
1.3K views
Hard filtering to reduce false positive variants due to poly track sequences
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updated by GenoMax 16K • | written by ManuelDB 11
0 votes
1 reply
1.1K views
A USER ERROR has occurred: Bad input: Values for QD annotation not detected for ANY training variant in the input callset. VariantAnnotator may be used to add these annotations.
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updated by raphael.B 57 • | written by sam_brown_araujo 0
0 votes
1 reply
2.0K views
Treemix is taking too long running
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updated by Michael Dondrup 5.6K • | written by Camila Martínez 4
0 votes
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can someone please explain the DAPARS output?
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written by PK 13
0 votes
7 replies
2.2K views
How to create a tax_id_map file for getting scientific names in BLASTN output
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written by Maria 0
0 votes
0 replies
487 views
What to do with ALDEx2 associations where p < 0.05, but the 95% confidence intervals bridge zero
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updated by Ram 4.5K • | written by Sam 0
0 votes
2 replies
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low ribosomal protein in scrnaseq data
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updated by Ram 4.5K • | written by hemnes.boston.87 0
0 votes
1 reply
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Redundant Database for BLAST search
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updated by GenoMax 16K • | written by Emily 0
0 votes
1 reply
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Should mutations in repetitive base positions be considered real
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updated by Joe 2.2K • | written by tan 1
0 votes
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Extracting Enhancer Regions from ENCODE Annotation Files
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updated by Alexandra 0 • | written by YamengWu 0
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VG - Verifying presence or absence of variants in Pangenome Graph
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updated by Jordan M Eizenga 78 • | written by nkls063408 0
0 votes
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Using get_normalized_expression (scVI) vs. Log-Normalized Counts
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written by Nicolas 0
0 votes
1 reply
688 views
Collapse technical replicates in DEGS
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updated by Ram 4.5K • | written by drajangirija 1
0 votes
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Time-series statistics for a small amount of genes
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written by Aspire 43
0 votes
0 replies
616 views
News: Course - Introduction to R Shiny
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0 votes
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minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
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written by shinyjj 7
0 votes
1 reply
797 views
Isoforms and Transcriptome assembly with direct RNA Nanopore reads
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updated by GenoMax 16K • | written by mariana.villegas 0
2 votes
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Randomly select a number of variants and samples from a multi-sample VCF file (pVCF)
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updated by Michael Dondrup 5.6K • | written by ' 34
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Need to split a cram file into smaller pieces - how to extract and save cram format to a new file?
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updated by weisburd 1 • | written by Ann 241
0 votes
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Hybrid assembly with Unicycler and multiple files of input
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updated by shelkmike 201 • | written by langziv 8
0 votes
3 replies
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What should I use correlate/compare microbiome compositional data to other data types
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updated by dthorbur 350 • | written by Faith 5
0 votes
0 replies
717 views
How to Accurately Determine Unique Mapped Reads from HISAT2 Output summary file
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updated by GenoMax 16K • | written by Nelo 2
0 votes
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News: Course: Advance your Python Skills for Life Sciences
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updated by Ram 4.5K • | written by Transmitting Science communication 7
0 votes
0 replies
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News: Course: Introduction to R
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