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Comment: Comment: Randomly select a number of variants and samples from a multi-sample VCF file (p
written by ' 34
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1 reply
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Comment: Comment: Randomly select a number of variants and samples from a multi-sample VCF file (p
written by ' 34
2 votes
11 replies
7.0K views
Randomly select a number of variants and samples from a multi-sample VCF file (pVCF)
vcf pvcf
updated by Michael Dondrup 5.6K • | written by ' 34
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1 reply
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Comment: Comment: RSEM BAM outputs, which one to use for RSeQC?
written by ' 34
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Comment: Comment: RSeQC - does it make sense to run it on the genome BAM when alignment was to tra
written by ' 34
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Comment: Comment: How to run STAR with multiple files
written by ' 34
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4 replies
1.9K views
RSeQC - does it make sense to run it on the genome BAM when alignment was to transcriptome with STAR?
star transcriptome genome rseqc qc
updated by Istvan Albert 10K • | written by ' 34
0 votes
1 reply
1.0K views
Are Read Groups (@RG tags) important when using tools like STAR, Kallisto, and Salmon for alignment?
alignment rna-seq rg group read
updated by ATpoint 9.1K • | written by ' 34
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1 reply
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Comment: Comment: Common practice for aligning hundreds of FASTQ files? Would the resulting BAM fi
written by ' 34
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3 replies
1.8K views
Common practice for aligning hundreds of FASTQ files? Would the resulting BAM files need to be merged into one? Is there any benefit to align 1000 samples at the same time rather than in batches?
fastq alignment bam rna-seq star
written by ' 34
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1 reply
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Comment: Comment: Does the absence of BAI file just cause an algorithm to run slower or would it a
written by ' 34
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Comment: Comment: Does the absence of BAI file just cause an algorithm to run slower or would it a
written by ' 34
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6 replies
3.0K views
Does the absence of BAI file just cause an algorithm to run slower or would it also generate incorrect results? For example, why doesn't RSEM require a BAI file?
bai alignment bam rsem gene-expression
updated by Istvan Albert 10K • | written by ' 34
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Comment: Comment: Will Python Take The Place Of R?
written by ' 34
9 votes
8 replies
5.1K views
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have as a bioinformatician?
cv industry career
updated by Ram 4.5K • | written by ' 34
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Comment: C: Gene (mRNA) - Protein Interaction databases and prediction
written by ' 34
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Answer: A: Normalized Smith-Waterman similarity score based on pairwise amino acids sequenc
written by ' 34
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3 replies
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Gene (mRNA) - Protein Interaction databases and prediction
ppi protein gene mrna databases
updated by c.chakraborty 18 • | written by ' 34
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Comment: C: Classify, organize, and cluster a list of proteins / discovering relations betwe
written by ' 34
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Comment: C: Classify, organize, and cluster a list of proteins / discovering relations betwe
written by ' 34
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