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0 votes
5 replies
1.9K views
call peak for all replicates in all conditions using macs2
macs2 atacseq
updated by zau saa • zau saa • written by QX • QX
0 votes
0 replies
870 views
Are equal whisker lengths important in an RLE plot?
eda plot rnaseq edaseq rle
written by BioinfGuru BioinfGuru
0 votes
4 replies
1.4K views
trimming 151bp to shorter k-mer in ATAC-seq analysis
atac-seq
written by QX • QX
6 votes
15 replies
56K views
Get chromosome sizes from fasta file
genome ucsc
updated by Dave Carlson Dave Carlson • written by rioualen rioualen
6 votes
20 replies
89K views
Sequence length from Fasta
fasta
updated by Diogenes • Diogenes • written by bongbang • bongbang
0 votes
3 replies
2.1K views
Merged Reference Panel using WES data
sequencing imputation reference
updated by GenoMax GenoMax • written by shamav523 • shamav523
7 votes
4 replies
6.2K views
Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
updated by codingzombie • codingzombie • written by Kevin Blighe Kevin Blighe
0 votes
0 replies
554 views
How can I visualise the gene order for fungal mitogenomes?
mitogenome fungal genomics
written by madders73 • madders73
0 votes
3 replies
1.3K views
flipped BAM files in IGV after STAR aligner
igv aligner star bam rna-seq
updated by rfran010 • rfran010 • written by veronicam • veronicam
1 vote
2 replies
1.6K views
Integration of scRNA-seq datasets from different tissues
scrna-seq
updated by OmnibusX • OmnibusX • written by Immreg • Immreg
0 votes
3 replies
1.4K views
Canu Nanopore Genome assembly optimization
slurm assembly genome canu nanopore
updated by Dave Carlson Dave Carlson • written by SomeOne • SomeOne
0 votes
3 replies
1.4K views
Relative abundance of plasmid DNA content in each sample
illumina e.coli wgs
written by adarsh • adarsh
0 votes
0 replies
574 views
Tool: TCGA-DDR: A tool for Survival and Genomic feature analysis
damage ddr tcga dna survival
written by camelia.mocanu • camelia.mocanu
0 votes
2 replies
1.5K views
How to fix this error while performing QC in PLINK "Warning: 228 het. haploid genotypes present"
hapmap plink gwas qc
written by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar
0 votes
2 replies
905 views
Remove specific reads from a metagenomic sequencing run
metagenomics
updated by colindaven colindaven • written by SushiRoll • SushiRoll
0 votes
1 reply
711 views
How can you separate and ignore the expression changes caused by single cell isolation from the single cell transcriptome ?
cell single trancriptome
updated by dsull dsull • written by lidasoltani2050 • lidasoltani2050
0 votes
4 replies
1.6K views
EdgeR gmlQLF with low number of genes
edger dge pseudobulking
updated by Gordon Smyth Gordon Smyth • written by merdanosman • merdanosman
0 votes
0 replies
835 views
Job: Senior Scientist position (m/f/d) computational biology/bioinformatics at UKSH Prof. Martin Kircher
bioinformatics genomics
written by alwayshope • alwayshope
0 votes
3 replies
1.5K views
How to generate GFF3 or GTF files for a custom reference.
gff3 gtf
updated by Ram Ram • written by SDVelivela • SDVelivela
0 votes
6 replies
2.2K views
Batch correction for RNA-seq using ComBat-seq for same group and batch
sva combat_seq combat deseq2 rna-seq
written by botloggy • botloggy
0 votes
5 replies
1.7K views
Any recommended way to share ChIP track to collaborator through UCSC browser without using local FTP?
chip-seq ucsc-genome-browser
written by Pei Pei
0 votes
2 replies
1.7K views
topGO R package - how to account for fold expression and p value
r proteomics topgo enrichment
written by Sven • Sven
3 votes
5 replies
2.7K views
Forum: Books and Blogs guiding the programming practice in bioinformatic research?
r python programming
written by JustinZhang • JustinZhang
0 votes
1 reply
737 views
Assembly of chloroplast genome from plant WGS
plant assembly chloroplast illumina wgs
updated by GenoMax GenoMax • written by adarsh • adarsh
0 votes
5 replies
1.5K views
Combining Overlapping ATC Code Usage in R
r pharmacogenetics
written by d.s.zimmerman • d.s.zimmerman
0 votes
0 replies
842 views
News: Intro to Linux for Genomics Online Course
linux workshop genomics
updated by Ram Ram • written by Kat @ EdGe • Kat @ EdGe
0 votes
7 replies
2.2K views
BUSCO v3 eukaryotic database
genome assembly busco
updated by GenoMax GenoMax • written by ccruz • ccruz
0 votes
0 replies
1.2K views
Somatic variant filtering necessary files
getpileupsummaries
written by Anitha • Anitha
0 votes
0 replies
465 views
Blog: Posey Lab: Beyond Replication with scRNA-seq Analysis in g.nome®
software platform
updated by Ram Ram • written by Shikha Sanghvi • Shikha Sanghvi
0 votes
1 reply
818 views
Testing for specific genes of whole RNA Sequencing
r deseq2 sequencing rna
updated by ATpoint ATpoint • written by hagl • hagl
0 votes
3 replies
1.0K views
RNA seq data analysis
rna-seq
updated by Ram Ram • written by mohamadhosein.shams1381 • mohamadhosein.shams1381
0 votes
11 replies
2.0K views
Use R to Produce CpG Information
r cpg
written by Dana • Dana
0 votes
0 replies
823 views
Job: Researcher (m/w/d) in Data Management and Bioinformatics - LIED AG Prof. Busch
data management researcher
written by alwayshope • alwayshope
1 vote
4 replies
1.7K views
Need help with design/workflow please?
deseq2 batch workflow
written by BioinfGuru BioinfGuru
0 votes
0 replies
635 views
News: Course: Structural Variant Detection and Comparison
structural-variants svs nanopore
written by Physalia-courses Physalia-courses
0 votes
0 replies
666 views
News: Course: Transform your data into an interactive web app with R Shiny
rshiny dataviz course
written by Transmitting Science communication • Transmitting Science communication
0 votes
1 reply
726 views
What may cause my z-score-FDR distribution
fdr z-score crispr_screen
updated by ATpoint ATpoint • written by Pallondyle • Pallondyle
0 votes
4 replies
1.2K views
How can I find fasta sequences for gp120 and gp41?
gp41 gp120 subtypes hiv env
written by mark.pekarsky • mark.pekarsky
0 votes
5 replies
1.4K views
Pcoa plot
pcoa
updated by jared.andrews07 jared.andrews07 • written by tolulope • tolulope
0 votes
10 replies
2.5K views
Low mapping rate using SALMON
rna-seq
updated by GenoMax GenoMax • written by Pegasus • Pegasus
0 votes
3 replies
2.0K views
If TPM is not comparable across cohorts, can it be used as the input for ML models if we have RNASeq data from multiple cohorts?
tpm rna-seq machine-learning
updated by LChart LChart • written by ivicts • ivicts
0 votes
1 reply
2.8K views
Demultiplex fastq sequences based on sequence header
demultiplexing barcodes fastq nanopore
updated by GenoMax GenoMax • written by ja569116 • ja569116
0 votes
0 replies
596 views
News: course on Generalized Linear Mixed Models in R
r dharma mixed-models gllm
written by Physalia-courses Physalia-courses
0 votes
0 replies
1.1K views
Job: Computational/Bioinformatics Solutions for CRISPR Screening
cro
updated by GenoMax GenoMax • written by Friyunnwoo • Friyunnwoo
0 votes
6 replies
2.1K views
How to convert .sdf files into .sdf.gz?
file-conversion
written by Sanjukta • Sanjukta
1 vote
0 replies
1.1K views
News: Core_nt: new default database for NCBI nucleotide BLAST
core_nt ncbi blastn
written by EricS_NCBI • EricS_NCBI
0 votes
3 replies
2.7K views
Cibersort input data
cibersort
updated by DareDevil DareDevil • written by Maryam • Maryam
0 votes
2 replies
1.0K views
homo sapiens VCF
alignment homo-sapiens vcf
updated by Ram Ram • written by Sanazarghami4444 • Sanazarghami4444
0 votes
0 replies
605 views
News: Check Out Our New Desktop App for scRNA-seq Data Analysis – Beta Testers Wanted!
scrnaseq
written by OmnibusX • OmnibusX
0 votes
2 replies
1.5K views
Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
sureselect hg38 wes sv
written by George • George
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