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0 votes
1 reply
1.0K views
Ethnicity information in GTEx dataset
metadata gtex
updated by GenoMax 16K • | written by husensofteng 41
0 votes
1 reply
647 views
How can I flag possible errors in the handbook collection?
feedback
updated by Pierre Lindenbaum 17K • | written by Fanta 1
0 votes
2 replies
1.2K views
RNA-seq and Chip Seq alignment
chip-seq rna-seq alignment
updated by Ram 4.5K • | written by alphaflylizard 0
2 votes
6 replies
9.2K views
Download Hg18 Snp Database
snp
updated by DareDevil 448 • | written by Ardmore 14
0 votes
4 replies
2.8K views
Microbial PacBio metagenomes and MAG pipeline (assembly/binning) METABAT
binning mag pacbio metabat
updated by dportik 4 • | written by l.gallucci 2
0 votes
0 replies
1.1K views
Job: Job opening for a Computational Biologist position at Weill Cornell Medical College, New York , USA
computational-genomics cornell transcriptomics gi-oncology
updated by Ram 4.5K • | written by mas9313 0
1 vote
10 replies
2.5K views
ncRNA database for mus
contamination ncrna sequencing
updated by Jack Tierney 45 • | written by tommy 4
0 votes
1 reply
3.0K views
Seurat V5 Subscript Out of Bounds Error
seurat scrna
updated by bk11 312 • | written by KokiBio 0
1 vote
0 replies
1.3K views
News: Course - Machine Learning for Multi-Omics Integration
machine-learning big-data multi-omics data-integration deep-learning
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
4 replies
1.7K views
Overlapping reads between two BED windows
samtools bam bedtools coverage
written by pablo 35
0 votes
0 replies
512 views
Are there reliable assays other than genome sequencing, to measure tumor heterogeneity?
ngs tumor-heterogeneity wgs
updated by Ram 4.5K • | written by anubratadas 2
0 votes
1 reply
1.0K views
Gene Regulatory Network Inference Data Needed
grn scatac-seq scrna-seq single-cell gene-regulatory-networks
updated by Ram 4.5K • | written by Manuel Sokolov Ravasqueira 12
1 vote
1 reply
1.0K views
Remove microbes(cobionts) contamination: before or after insect de novo genome assembly?
contamination genome assembly
updated by Philipp Bayer 888 • | written by hankool 0
1 vote
9 replies
6.2K views
Error Muscle alignment (msa package, through Rscript)
msa r muscle
updated by ulrich.bodenhofer 1 • | written by alnam 1
1 vote
1 reply
709 views
Metatranscriptome pipeline: taxonomy and functional recover
metatranscriptome pipeline phyloflash
updated by jeevii 0 • | written by l.gallucci 2
0 votes
5 replies
1.5K views
SNPs are not detected.
bcftools snp wgs
updated by Pierre Lindenbaum 17K • | written by R 1
0 votes
5 replies
1.8K views
Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
disturbution cutadapt adapter trimming fastqc
updated by dsull 781 • | written by ashaneev07 5
0 votes
2 replies
981 views
ONT Improved RCA Barcoded Plasmid Sequencing
ont plasmid-sequencing nanopore ngs
updated by Ram 4.5K • | written by thewiggler 0
0 votes
1 reply
955 views
DEseq2 interactions
deseq2
updated by Ram 4.5K • | written by drajangirija 1
1 vote
4 replies
1.5K views
Genotype File
genotype
updated by dsull 781 • | written by goyal.shiwali 2
2 votes
4 replies
1.4K views
bcftools AA annotation failing
bcftools vcf ancestral-allele
written by Whirlingdaf 6
0 votes
8 replies
2.5K views
Alignment of multiple files using STARSolo
starsolo
written by otieno43 4
0 votes
3 replies
2.5K views
are illumina fastq files typically split by lane?
illumina fastq
updated by swbarnes2 1.5K • | written by npb27 2
0 votes
0 replies
760 views
News: Course: Introduction to Deep Learning
deep-learning machine-learning python convolutional-neural-network
written by Physalia-courses 281
3 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, August 22, 2024
herald
written by Biostar 380
0 votes
8 replies
3.8K views
Canu genome assembly output
flye assembly fusarium canu fungus
written by SomeOne 33
0 votes
1 reply
1.3K views
Issue with ANGSD realSFS
heterozygosity realsfs angsd
written by Begonia_pavonina 22
0 votes
5 replies
2.8K views
Extracting supplementary reads from bam file
samtools bwa-mem
updated by cmdcolin 448 • | written by g1ang 2
0 votes
0 replies
627 views
Beagle 4.1 cannot remove batch effect caused by NGS read depth
beagle batch-effect sequencing-depth
updated by Ram 4.5K • | written by Qi 0
285 votes
33 replies
142K views
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates
updated by tshtatland 19 • | written by Obi Griffith 2.0K
0 votes
2 replies
1.6K views
Confusion Regarding Tape Station Peak
library transcriptome
updated by colindaven 844 • | written by Bhavya 0
0 votes
6 replies
1.8K views
GATK4 haplotypecaller calls variants on regions without read coverage
gatk4 cnnscorevariants haplotypecaller
written by thomas.heigl.ibk 2
0 votes
7 replies
2.2K views
Hard to automatically download NCBI protein IDs
ncbi batch-download
updated by Ram 4.5K • | written by The 18
0 votes
0 replies
635 views
VG: Get input file error
vg
updated by Pierre Lindenbaum 17K • | written by Taek 0
1 vote
2 replies
1.4K views
Somatic Variant Calling from Nanopore Data
variant somatic calling cancer nanopore
updated by GenoMax 16K • | written by adarsh 8
0 votes
9 replies
5.4K views
Running vcf2maf on snpeff-annotated vcfs
vcf2maf snpeff
updated by Ram 4.5K • | written by becky3.a 0
0 votes
0 replies
883 views
the number of reads pre and post running "isoseq refine"
isoseq pacbio
written by wqqgenetics 0
0 votes
6 replies
2.0K views
Why Can’t I Find the URL and Details for I-Mutant3.0? Does It Even Exist? Urgent Help Needed from Experts!”
i-mutant
written by 半桶 0
0 votes
2 replies
1.3K views
Job: Freelancer - to set up a server running space ranger?
linux-server space-ranger
updated by Michael Dondrup 5.6K • | written by ia2240 0
0 votes
4 replies
1.7K views
No mouseOver effect in my track hub on UCSC genome browser
ucsc-genome-browser
updated by Ram 4.5K • | written by Pei 26
0 votes
1 reply
1.1K views
Quality check in long read (ONT, PacBio) bam files
qc bam minimap2
updated by GenoMax 16K • | written by shinyjj 7
0 votes
1 reply
847 views
tag definations in GAF file produced by vg giraffe
vg
written by chuanj8848 0
1 vote
0 replies
871 views
How to generate a GAF that shows alignments to all component genomes in graph
pangenome minigraph vg minigraph-cactus
written by peterdfields 4
0 votes
4 replies
3.0K views
Fragmented BUSCOs of genome assemblies - How to improve scores?
fragmented buscos
updated by young_bioinformatician 25 • | written by neolycus 0
0 votes
0 replies
695 views
Branches are too far from the leaves in the circular tree display with ete3
ete3 circular-tree
updated by Ram 4.5K • | written by Bertrand 0
0 votes
4 replies
1.9K views
How to assign cell types after integration in scRNA
scrna-seq
updated by OmnibusX 13 • | written by Francesco 2
3 votes
0 replies
673 views
News: Registration for the Nextflow Summit is still open. Get a 20% discount!
seqera nextflow
updated by Ram 4.5K • | written by Marcel Ribeiro-Dantas 61
0 votes
4 replies
1.7K views
AWK for replacing the content of a column in a csv file with the content of another column from another csv WITHOUT USING THE COLUMN NUMBER
bash awk csv
updated by GenoMax 16K • | written by giulia.trauzzi 3
0 votes
2 replies
1.1K views
Where do I gather indel and frameshift information in SnpEff output?
frameshift wgwps snpeff gatk indels
written by mgranada3 6
4 votes
1 reply
1.1K views
Cannot use more than 2 sample IDs when demultiplexing using Demuxlet
snp variant demultiplexing demuxlet scrnaseq
written by Chilly 129
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