More posts like this
-
Data Normalization of RNA-seq gene expression
written by maryak •I want to classify metastasis and non metastasis samples. I am using "gene expression RNA-seq - STAR - Counts" data provided by https://xenabrowser.net/.It data has …
-
Copy number alteration prediction from DNA-seq
written by ANAM •I want to do project on copy number alteration prediction from DNA-seq. I have selected cancer type 'Breast cancer'. Dataset requirement is genes, their CNA …
-
RNAseq count - normalization
written by sabin •Hi all, I have two matrices with RNAseq UMI counts, sequenced in 2 different moments (from same person, same lab, but different timing). - Matrix-1 …
-
Gene Set Enrichment Analysis with RNA-seq data
written by deepak18 •I have TCGA data for RNA expression for breast cancer samples (log2 normalised fpkm values) and I want to perform GSEA on it to look …
-
Matched Normal Tissue Sample of RNAseq data from TCGA
written by rajeshHello Everyone I have downloaded the RNA seq data RSEM normalized from TCGA with the help of TCGA Assembler. When I look for Normal Samples …
-
Cancer data download with normal sample
written by mhasa006I want to download cancer dataset that contains some normal (control) samples too. Right now I can download data from [BoradInstitute][1] but I believe the …
-
gene expression for cancer identification
written by maryak •As we know that RNA-seq is a relatively expensive method but we use gene expression for cancer detection or identification of cancer related genes why …
-
looking for normal cancer WGBS data
written by iiiiloveii19 •Hello, I am working on a research with my professor on identifying hemimethylation on breast cancer and normal breast samples. We do have breast cancer …
-
Normal Patient Samples from GSE62944
written by hAjmal •Hello, I am trying to do Differential Expression Analysis of Genes of Normal vs. Breast cancer patients. For that ourpose, I chose GEO data GSE62944 …
-
How To Find Rna-Seq Data Of Published Papers?
written by userwhere can one find RNA-seq data of published papers? The following three papers have large RNA-seq data sets in open-access journals but as far as …
go to the TCGA...
Your data analysis would be confounded. Control samples from GEO and cancer samples from your lab.
better get everything from the TCGA, otherwise will have batch effect..
TCGA still has batch effects…