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singcell
singcell
Reputation:
10
Joined:
6.6 years ago
Last seen:
2.0 years ago
Location:
United States
Latest posts by user
0 votes
1 reply
1.3K views
extracting cell specific reads from cellranger BAM output file
bam cellranger seurat
updated by Ram Ram • written by singcell • singcell
0 votes
0 replies
641 views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq imprinted 10x genes
written by singcell • singcell
0 votes
2 replies
1.4K views
Normalizing Salmon output count data matrix using DESeq2
tximport counts salmon deseq2
updated by ATpoint ATpoint • written by singcell • singcell
0 votes
1 reply
0 views
Comment: Comment: Number of cells in each clusters
written by singcell • singcell
0 votes
3 replies
2.0K views
Number of cells in each clusters
numbers seurat cell
updated by jared.andrews07 jared.andrews07 • written by singcell • singcell
0 votes
1 reply
1.2K views
Removing contamination of set of genes from selected cell clusters
contamination scrna-seq seurat cell
updated by ATpoint ATpoint • written by singcell • singcell
0 votes
1 reply
1.3K views
which version "EnsDb.Rnorvegicus.v79" assembly correspond to rn5 or rn6?
reference single-cell signac genome
updated by ATpoint ATpoint • written by singcell • singcell
0 votes
0 replies
959 views
Gene expression values each samples (replicates) using `AverageExpression` function
seurat single-cell averageexpression
written by singcell • singcell
0 votes
1 reply
0 views
Comment: C: How do I change size of gene names displayed on plotHeatmap from scater R Packag
written by singcell • singcell
0 votes
1 reply
0 views
Comment: C: Cluster sub-set analysis using Seurat
written by singcell • singcell
2 votes
13 replies
26K views
Cluster sub-set analysis using Seurat
seurat single-cell
updated by j.gleixner • j.gleixner • written by singcell • singcell
0 votes
0 replies
0 views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
written by singcell • singcell
0 votes
0 replies
0 views
Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
written by singcell • singcell
0 votes
0 replies
0 views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
written by singcell • singcell
0 votes
0 replies
0 views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
written by singcell • singcell
0 votes
9 replies
5.0K views
Deterimining overall number of differentially expressed genes between WT and KO samples
seurat scrna-seq deg findmarkers
written by singcell • singcell
0 votes
0 replies
0 views
Comment: C: EdgeR for single cell differential expression analysis
written by singcell • singcell
0 votes
1 reply
995 views
Is it possible to determine if cells are clustered by samples and not by cell types?
single-cell rna-seq seurat sample variation
updated by Biostar Biostar • written by singcell • singcell
1 vote
0 replies
921 views
Calculating in SEURAT, list of highly dysregulated genes across conditions in a particular cluster.
rna-seq seurat stimulated vs control pbmcs
written by singcell • singcell
0 votes
1 reply
0 views
Comment: C: Calculating differential expression genes between two sample sequenced using 10x
written by singcell • singcell
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