Is it possible to determine if cells are clustered by samples and not by cell types?
I am analyzing single-cell RNA-Seq data from 10x platform using Seurat.
I have couple of questions:
1) Is it possible to determine if cells are clustered by samples and not by cell types. Which tool can I use for this analysis?
2) If there is any simple tool available to remove this effect.
Thank you.
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This previous discussion would be helpful: about batch correction in scRNA-seq