Normalizing Salmon output count data matrix using DESeq2
I import counts and abundance matrix from Salmon output using tximport. I want to normalize the Salmon output count matrix using DESeq2 package. What code should I use to achieve this task? Can I do similar with Abundance output of Salmon?
Thank you
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singcell •
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cross-posted and answered: https://support.bioconductor.org/p/9148559/
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Read the DESeq2 manual which covers all that.