how do normalization for transcript length
0
0
Entering edit mode
5.3 years ago
lkianmehr ▴ 100

I have got transcript quantification by Salmon, then import them to tximport and got transcript count, length and abundances. now I would like to make a transcript coverage graph in terms of normalized counts on normalized position along transcript. I have normalized counts by DESeq2 but I don't know how do normalization for transcript length. Does anybody have any idea?

thanks

transcript coverage plot salmon tximport • 1.9k views
ADD COMMENT
0
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 1943 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6