Command line Prophage detections tools · Biostar

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Command line Prophage detections tools

Hi! I'm trying to run prophage detection in command line. I've been using PHASTEST and its web server, but would like to run it on a group of samples (the API and the docker installation didn't work out for me). Is there any other command line tools that would give informative outputs like PHASTEST? I've only tried DBSCAN-SWA so far, and it seem like it overestimated the number of prophages. Thanks!

phages genomes bacterial

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written 2.0 years ago by Rika •

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