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0 votes
1 reply
1.1K views
How to choose cells that co-express several genes with scanpy?
scanpy scrna-seq single-cell
updated by LChart 518 • | written by bioinfo 19
0 votes
8 replies
2.3K views
featureCounts output
macs2 featurecounts
updated by rfran010 174 • | written by QX 9
0 votes
4 replies
1.2K views
Replace SB flag by PASS in my VCF file
vcf
written by ManuelDB 11
0 votes
0 replies
935 views
Job: PhD Position "A Bioinformatics Approach to Analyzing Epistatic Interactions in Enzymes using Long-read Sequencing Data"
machine-learning deep-mutational-scanning oxford-nanopore
updated by Ram 4.5K • | written by funcgen 1
0 votes
0 replies
1.2K views
Job: Request for Proposals: Amazon Web Services (AWS) Web Development & Bioinformatics Consultant
aws ffar
updated by Ram 4.5K • | written by ffarhr 0
0 votes
6 replies
1.7K views
Selecting top signature score from signatures with different distributions
r classification distributions
updated by LChart 518 • | written by yura.grabovska 94
0 votes
1 reply
949 views
How to download the mutational signatures for TCGA?
mutational-signature tcga
updated by LChart 518 • | written by Camelia 0
0 votes
11 replies
2.9K views
sequenceTubeMap input files
sequencetubemap vg
updated by Jordan M Eizenga 78 • | written by Mayank 1
0 votes
5 replies
1.7K views
Trimmomatic in windows
windows 16s trimmomatic
updated by GenoMax 16K • | written by Clíona 0
0 votes
4 replies
1.2K views
high no_feature in htseq
rna-seq htseq-count quantification
written by Srujana 1
2 votes
6 replies
5.1K views
meaning of "primary alignment" in samtools
samtools
updated by i.sudbery 2.3K • | written by Francois Piumi 8
0 votes
2 replies
784 views
bacterial microRNA data retrieval
mirna bacteria srna
written by praddyumnapdm 0
0 votes
1 reply
1.3K views
How do I Download Metagenomics Data from NCBI or EBI with its Metadata?
metagenomics ncbi
updated by Ram 4.5K • | written by John 1
0 votes
5 replies
1.3K views
Transcription factors associated with Differentially Expressed Genes
transcription enrichment
written by kamalika 0
0 votes
1 reply
796 views
GATK4 VariantAnnotator deletes variants
gatk4
updated by Pierre Lindenbaum 17K • | written by ManuelDB 11
0 votes
4 replies
1.2K views
filtering blastx output file
blastx query filtration coverage
written by Bushra Bibi 8
0 votes
0 replies
581 views
TCGA methylation analysis
methylation
written by ali 0
0 votes
0 replies
602 views
Heterozygous SNPs Allele Balance Threshold
snps genomics wes allele
updated by Ram 4.5K • | written by menyawino 0
0 votes
4 replies
2.1K views
Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DRAGEN Mode
gatk variant-calling dragen bwa
written by George 3
0 votes
1 reply
803 views
Filter vcf file by position AND alternative allele
bcftools vcf filter
updated by zx8754 1.2K • | written by _quantum_girl_ 8
0 votes
3 replies
8.3K views
DESeq2 vst function error
deseq2 rna-seq r normalization
updated by DareDevil 448 • | written by lenC_biotecLover 9
0 votes
5 replies
5.4K views
Get position in GRCh38 from rsid
snp rsid location
updated by Philipp Bayer 888 • | written by _quantum_girl_ 8
0 votes
5 replies
1.6K views
Same sample and reference genome, different number of reads
starsolo single-cell rnaseq
updated by rfran010 174 • | written by Nicholas 2
0 votes
0 replies
440 views
Error Code 104 in STAR Alignment
star
written by deleonalyssa289 0
0 votes
1 reply
792 views
How to Subset a Custom BLAST Database for Specific Genes of Interest?
blastp blast
written by samuel.himes 0
0 votes
4 replies
1.6K views
Determining library prep: rRNA depletion or mRNA enrichment
rrna library mrna
updated by rfran010 174 • | written by Synanth 0
5 votes
5 replies
27K views
Herald: The Biostar Herald for Monday, July 22, 2024
herald
updated by LChart 518 • | written by Biostar 380
0 votes
2 replies
1.0K views
Remove bacterial and protoza from Kraken2 EuPathDB
database kraken2 eupathdb
written by Christopher 1
0 votes
0 replies
546 views
very basic metascape raw data query
mrna mirna metascape
updated by Ram 4.5K • | written by Yvonne 0
0 votes
0 replies
544 views
Web server/tool for structural motif prediction on multiple proteins?
pdb
updated by Ram 4.5K • | written by pl559 0
0 votes
1 reply
1.4K views
AutoDock Tools: problems with "choose torsion in currently selected residues"
autodocktools docking
updated by GenoMax 16K • | written by Josefina 0
0 votes
5 replies
1.8K views
Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
featurecounts
updated by swbarnes2 1.5K • | written by 2406691063 0
0 votes
0 replies
438 views
Length of base-pairing required in Argonautes
structural-biology argonaute
updated by Ram 4.5K • | written by Ali 0
0 votes
0 replies
645 views
Clarification on ConClave Scoring and KMA Compatibility with Nanopore Reads
kma nanopore alignment
written by Dim 0
1 vote
5 replies
3.0K views
DESeq2 results vs. shrinkage results
shrinkage deseq2 sequencing rna
updated by i.sudbery 2.3K • | written by hagl 2
0 votes
1 reply
702 views
how to visualize Geno Ontology classification
gene-ontology
updated by bk11 312 • | written by fati90sellam90 0
0 votes
1 reply
764 views
Extract the Variables with the Most Influence on the Ordination in an LDA
biostatistics lda r
updated by Pierre Lindenbaum 17K • | written by Mgs3 3
0 votes
2 replies
1.5K views
Building a Kraken2 Database
taxonomy kraken2 metagenomics
updated by Ram 4.5K • | written by Ahiad Chen Zion 0
0 votes
2 replies
2.0K views
Remove the venn diagram fill color
r ggplot2 venn
written by G.S 6
0 votes
3 replies
948 views
samtools sort
samtools rna-seq
updated by ATpoint 9.1K • | written by Srujana 1
0 votes
1 reply
1.3K views
batchtools_slurm job setting with seurat
seurat hpc slurm
updated by DBScan 53 • | written by marco.barr 22
0 votes
1 reply
872 views
Find closest taxonomic ID from a list of tax IDs
taxonomy ncbi
updated by GenoMax 16K • | written by noodle 65
1 vote
6 replies
2.0K views
What should be the term, "insert" or "insert size"?
tlen sequencing alignment
updated by Ram 4.5K • | written by Anisur Rahman 8
0 votes
1 reply
705 views
Regarding correlation analysis
correlation
updated by Ram 4.5K • | written by Stuti 0
0 votes
0 replies
651 views
save.rnb.set warnings when trying to save rnb.set
rnbeads methylation bioconductor
written by hayleyw 0
0 votes
1 reply
848 views
How do I use msigdb to annotate the single cell data?
msigdb single-cell
updated by Ram 4.5K • | written by biotrekker 11
0 votes
2 replies
1.4K views
Bulk RNA seq analysis on multiple conditions (4)
rna-seq
updated by Ram 4.5K • | written by SO-YEON 0
0 votes
3 replies
2.1K views
Best way of getting a good introduction with bioconductor and biopyhton
bioconductor r biopython
updated by schlogl 18 • | written by ashwing.kofficial 1
0 votes
0 replies
629 views
GTEx files, single tissue cis-eQTLs
eqtl gtex
updated by Ram 4.5K • | written by dddyyylll 0
0 votes
2 replies
851 views
CpG island identification
cpg-islands
written by oluwoleolufunke 0
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