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0 votes
2 replies
993 views
Genotype imputation check
imputation
updated by GenoMax GenoMax • written by Sen • Sen
0 votes
14 replies
4.5K views
Reheadering a subsetted bam gives truncated file
samtools bam
updated by kalavattam • kalavattam • written by Luciferine • Luciferine
0 votes
0 replies
731 views
News: Online course: Introduction to Nextflow
nextflow pipeline workflow-manager reproducibility
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
1.5K views
Seurat v5 SCTransform warning messages (I consistently get 50 warnings)
sctransform snrna-seq
updated by fracarb8 fracarb8 • written by michelle.swarovski • michelle.swarovski
1 vote
11 replies
3.6K views
Basic guidance on Using 10x Genomics Data for De Novo Assembly
10x assembly
updated by GenoMax GenoMax • written by aleponce • aleponce
0 votes
5 replies
1.6K views
samtools mpileup include soft-clipped bases
samtools ngs soft-clip mpileup
written by noodle noodle
1 vote
6 replies
21K views
Continuously add lines to ggplot with for loop
r ggplot2
updated by BioinfGuru BioinfGuru • written by frcamacho frcamacho
0 votes
4 replies
1.3K views
Why Are There Differences in RNA-seq Results?
igv rna-seq
written by ZZOYEA • ZZOYEA
0 votes
2 replies
915 views
Regions Overlap failure using bwa-mem2
bwa-mem2 conda
written by jsmith120f • jsmith120f
0 votes
3 replies
3.4K views
DoubletFinder error
seurat doublets scrna
updated by Ram Ram • written by marco.barr • marco.barr
0 votes
1 reply
597 views
how to count polymorphic snps in vcf file
vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by 26bhagwat • 26bhagwat
0 votes
6 replies
2.5K views
Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc trimgalore multiqc trimmomatic
written by George • George
0 votes
1 reply
1.0K views
Discrepancies in F Coefficient and Heterozygosity Estimates
population-genetics f-coefficient plink vcftools
updated by Ram Ram • written by eleftosi • eleftosi
0 votes
11 replies
2.7K views
FASTQC: per base n content fail
fastqc
updated by GenoMax GenoMax • written by Eddie • Eddie
0 votes
3 replies
1.9K views
Changing font size in the key in heatmap.2
r heatmap heatmap.2
updated by Ram Ram • written by Gerard • Gerard
0 votes
0 replies
626 views
Mapping of gene names in GSVA
ensembl gsva hgnc
written by mrashad mrashad
0 votes
3 replies
782 views
Trycycler cluster crash
trycycler
updated by GenoMax GenoMax • written by Daniele • Daniele
5 votes
19 replies
79K views
Forum: Will A Masters In Bioinformatics Help Me In Getting A Job?
education career
updated by Ram Ram • written by Bioinfo • Bioinfo
1 vote
5 replies
51K views
How can I simply view the .vcf.gz file to get some basic information
snp genome
updated by venkat • venkat • written by nreid • nreid
0 votes
1 reply
1.3K views
Visualize in IGV mitochondrial variants found with MToolBox
igv mtoolbox mitochondria
updated by venkat • venkat • written by BIN • BIN
2 votes
11 replies
6.6K views
User friendly (visual&interactive) VCF/BCF mining tools (2021)
gui vcf
updated by venkat • venkat • written by William William
0 votes
1 reply
813 views
SNPs with missing INFO tags from bcftools mpileup
bcftools mpileup
updated by iraun iraun • written by malonzm1 • malonzm1
1 vote
6 replies
1.9K views
Problem with gather() in R
gather r
written by egascon • egascon
0 votes
2 replies
874 views
Merino sheep genetic map
recombination genetic-map
written by PKW • PKW
0 votes
0 replies
536 views
can i use cmapM(matlab) in windows OS?
converting 3 4 5 cmap level
written by kim • kim
0 votes
1 reply
1.2K views
Transferring Seurat Cluster Colours for scVelo analysis
seurat scvelo velocity scrnaseq
updated by antonioggsousa antonioggsousa • written by Megan • Megan
0 votes
1 reply
867 views
Asking the meaning of the reference sequence
bowtie2
updated by GenoMax GenoMax • written by Pallondyle • Pallondyle
0 votes
2 replies
1.3K views
Hisat2 mapping stringency
hisat2
written by MA • MA
0 votes
0 replies
1.1K views
Job: PhD and Postdoc Positions in AI-driven Drug Discovery at the University of Florida
computational-biology phd aidd postdoc
written by AIDD • AIDD
0 votes
14 replies
3.0K views
convert list to fasta format
python
updated by Ram Ram • written by pinheirofabiano • pinheirofabiano
0 votes
0 replies
501 views
qsea makeTable()
bioconductor qsea r maketable
updated by zx8754 zx8754 • written by Sophia • Sophia
0 votes
11 replies
3.8K views
Conversion of Gene Name to Ensembl ID
ensembl rna-seq
updated by LauferVA LauferVA • written by Amirhossein • Amirhossein
1 vote
17 replies
4.7K views
RNA STAR and trimming
trimming star rna-seq rna
updated by GenoMax GenoMax • written by casio • casio
0 votes
8 replies
3.9K views
How to reassign the orientation of clusters in pheatmap
r pheatmap heatmap
written by Meghan.T • Meghan.T
0 votes
0 replies
783 views
Training a Mini Calico/Borzoi Model using cardiomyocyte RNA-Seq, ATAC-Seq, and WGBS
borzoi wgbs calico rna-seq atac
updated by Ram Ram • written by Cameron.walker9900 • Cameron.walker9900
0 votes
0 replies
452 views
small scale of perb_score in the output from scRank and order of the rank
scrank
updated by Ram Ram • written by alwayshope • alwayshope
0 votes
10 replies
2.0K views
Extracting unmapped reads from a sam file and converting to fastq
samtools
updated by Ram Ram • written by drmodupe06 • drmodupe06
0 votes
0 replies
689 views
News: Course: RADseq data analysis using Stacks (online)
rad-seq genomics stacks phylogenomics population
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
3 replies
1.1K views
Mageck NEST cannot find control genes/sgRNAs
python mageck crispr-screen
updated by GenoMax GenoMax • written by liz.b • liz.b
0 votes
0 replies
643 views
How do I bin my individually assembled metagenome samples
metagenome binning
updated by Ram Ram • written by prateekshettys • prateekshettys
0 votes
4 replies
2.5K views
Multiple same UMI's mapped to the same cell with different sequence
10x umi bam scrnaseq barcode
written by zbidav • zbidav
0 votes
0 replies
750 views
Minfi - bumphunter M and Beta values
minfi methylation bumphunter
written by Eren • Eren
0 votes
2 replies
897 views
Get SYMBOL using mapIds with T2T genome ?
t2t
written by Picasa Picasa
0 votes
1 reply
747 views
HUB gene selection
hub-gene
updated by edoardofilippi1998 • edoardofilippi1998 • written by deepak • deepak
0 votes
0 replies
555 views
CNV calling with complex genomic background
cnv
written by 雨辰 • 雨辰
2 votes
4 replies
2.3K views
Forum: Resume building projects to break into bioinformatics?
job-hunting career-change
updated by BioinfGuru BioinfGuru • written by DdogBoss • DdogBoss
0 votes
1 reply
929 views
combine two density plots in one plot
r ggplot2 density_plot
updated by zx8754 zx8754 • written by G.S • G.S
0 votes
1 reply
1.4K views
Trinotate generates an empty report, only headers and no data inside
trinotate metatranscriptome docker
updated by Ricardo De Jesus Ehectal • Ricardo De Jesus Ehectal • written by jway • jway
2 votes
0 replies
420 views
merge-methcounts sites not sorted error
methpipe methylation
updated by Ram Ram • written by Connor • Connor
0 votes
0 replies
737 views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
mast differential-expression lmer
updated by Ram Ram • written by nhaus • nhaus
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