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0 votes
3 replies
1.2K views
retrieve genomic positions and chromosome number for a list of genes
position seq genomic rna
updated by Pierre Lindenbaum 17K • | written by Fatemeh 5
0 votes
3 replies
1.3K views
TB-PROFILER DELLY ISSUE
delly tb-profiler
updated by Jody Phelan 1 • | written by Bhawna 0
0 votes
1 reply
883 views
When to use Sam Sort on a Bam file?
sort sam collate bam
updated by Ram 4.5K • | written by Arthur 1
0 votes
1 reply
1.1K views
RepeatMasker format in SQuIRE Fetch
squire repeatmasker
updated by Bioinformatics_16 0 • | written by Javier 0
0 votes
7 replies
2.5K views
Could not locate a HISAT2 index corresponding to basename
hisat2 grch38
updated by GenoMax 16K • | written by altobialmunthir 0
0 votes
1 reply
899 views
Different Size VCF
gatk vcf compression
updated by Pierre Lindenbaum 17K • | written by Sd 0
0 votes
1 reply
1.2K views
Gene mapping issue using ClusterProfiler
clusterprofiler
written by alicecol 2
3 votes
4 replies
4.3K views
looking for 1000g hg38 reference data to anchor with my genomic data to plot the principal components
gwas hg38 principal-components
updated by chrchang523 1.1K • | written by nicole 3
0 votes
1 reply
961 views
Array vs WGBS: Can't I use a package designed for array data for WGBS or any other data?
wgbs methylation array
written by Burak Özyürek 1
0 votes
4 replies
1.6K views
evolutionary trees of sepecies
species evolutionary
updated by dthorbur 350 • | written by zhu 0
6 votes
0 replies
1.3K views
News: Changes coming to NCBI Web blast in August 2024
nt core_nt blast ncbi wwwblast
written by GenoMax 16K
0 votes
0 replies
1.0K views
Forum: Advice on Entering the field of Bioinformatics in Canada
career
updated by Ram 4.5K • | written by ubhimanpreet 0
1 vote
0 replies
504 views
Unusual indel peaks in bam file
rna-seq
updated by ATpoint 9.1K • | written by boczniak767 89
0 votes
1 reply
958 views
Fragment size of published single end RNAseq data
ngs single-end rna-seq rsem
updated by Ram 4.5K • | written by kojima.1aki 0
0 votes
1 reply
805 views
Allele frequency in gene sequence
allele-frequency
updated by Ram 4.5K • | written by Elizabeth 4
0 votes
1 reply
1.1K views
How to get copy number gain/loss from TCGA gene_level_copy_number
cnv copy-number tcga
updated by Ram 4.5K • | written by NB 0
0 votes
0 replies
738 views
Obtaining enriched motif result for each peak using ArchR
motif archr r enrichment
written by yuyu 0
0 votes
0 replies
637 views
Simulate interaction between a DNA and RNA with a Cas9 protein?
cas9 simulation molecular-dynamics
updated by Ram 4.5K • | written by yourgoodnabor 0
0 votes
1 reply
1.0K views
High Amount of UnAssignedNoFeatures in FeatureCounts Output
rna star featurecount
updated by Ram 4.5K • | written by Tom Brady 0
3 votes
5 replies
4.0K views
How to normalize long-read RNA-seq data for comparison with short-reads
rnaseq long-reads normalization short-reads
updated by GenoMax 16K • | written by Bernardo 3
0 votes
0 replies
864 views
Job: Assistant Teaching Professor in Biological Sciences
biology highereducation ucsd lifescience
written by UCSDBioSci 3
0 votes
1 reply
1.7K views
First nextflow script and I'm facing alot of errors, is my approach even correct?
conda bash python groovy nextflow
updated by Marcel Ribeiro-Dantas 61 • | written by Faith 5
0 votes
0 replies
809 views
Help in understanding cd-hit cluster results
cd-hit
written by Nilavrah 0
0 votes
1 reply
1.3K views
How to split a protein sequence data into train and test set based on a sequence identity cutoff?
clustering protein
updated by Mensur Dlakic 3.0K • | written by Nilavrah 0
0 votes
7 replies
1.9K views
How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata rna
updated by ATpoint 9.1K • | written by AlexStar 22
0 votes
1 reply
762 views
Find UniProt ID automatically for thousands of protein sequences
uniprot
updated by GenoMax 16K • | written by kareem.bagdadi 0
0 votes
2 replies
1.3K views
Ecocyc/Biocyc bulk download
gtf bed gff annotation
written by noodle 65
0 votes
0 replies
859 views
How to best check allele flipping between bed files?
plink bed
written by DN99 2
0 votes
0 replies
631 views
Cell-Cycle Variation in 10x Multiomics
seurat multiome 10x single-cell
updated by Ram 4.5K • | written by georgii.vdovin 0
1 vote
4 replies
1.3K views
Percentage Problem
gene alignment
updated by jared.andrews07 1.9K • | written by parb2182 1
0 votes
1 reply
2.4K views
rMATS-turbo build_rmats --conda issue: Run 'conda init' before 'conda activate'
conda rmats-turbo rmats
updated by GenoMax 16K • | written by Angelos 1
0 votes
2 replies
1.5K views
Cannot access taxdb in local blast search
taxonomy taxdb blastn
written by Luca Arbore 1
0 votes
0 replies
816 views
Should I focus on genes with MGI symbols when they have several Ensembl/Entrez IDs?
biomart entrez mgi ensembl ncbi
written by ev97 4
0 votes
1 reply
1.1K views
URL query parameters in JBrowse2
jbrowse2
written by alslonik 32
0 votes
0 replies
612 views
Transcriptome vs genome reference in gene expression analysis
gene-expression rna-seq transcriptome genome snv
written by bioinfo1994 2
0 votes
3 replies
1.3K views
Snakemake rule to copy files
snakemake
updated by raphael.B 57 • | written by DBScan 53
0 votes
0 replies
747 views
Calculation of RPM and deduplication
normalization metagenomics rpm deduplication
written by Luca Arbore 1
0 votes
3 replies
1.1K views
RNA seq data analysis
rna-seq
updated by pinheirofabiano 14 • | written by mohamadhosein.shams1381 0
3 votes
0 replies
1.2K views
Job: PhD in (epi)genomics/bioinformatics
forensics repetitive-dna epigenetics phd nanopore-sequencing
updated by Ram 4.5K • | written by Athina Vidaki 4
0 votes
3 replies
1.0K views
Error while doing trimmomatic
trimmomatic
updated by Ram 4.5K • | written by dr.deepakkukkar 0
1 vote
3 replies
3.2K views
Forum: leetcode for bioinformatics?
leetcode
updated by Matthias Zepper 524 • | written by microfuge 197
0 votes
3 replies
1.0K views
Open question: What's the best way to share an R environement?
r environement conda reproductibility
updated by ATpoint 9.1K • | written by Ondina 10
0 votes
0 replies
660 views
Blog: Revolutionizing Rare Disease Research with Long-read Sequencing
diseases rare complex wgs
written by Novogene 54
0 votes
0 replies
707 views
Blog: Where to Get Genotyping Data/GWAS Data
gwas genotyping
updated by GenoMax 16K • | written by Novogene 54
0 votes
2 replies
1.5K views
Is it possible to have a mitochondrial genome of size 30-40kbp in insects?
mitochondria genome assembly
written by Meeran 1
0 votes
3 replies
1.7K views
Where to find full operon annotations of E coli
gtf annotation gff bed
updated by massa.kassa.sc3na 65 • | written by noodle 65
0 votes
3 replies
1.0K views
Detection of chimeric HIV-Host transcripts
single-end hiv chimeric-transcripts
updated by Ram 4.5K • | written by Mrist01 0
0 votes
2 replies
1.0K views
Normalizing a fold change matrix
chip-seq change fold clustering merip-seq
written by Guy Shan 0
0 votes
0 replies
496 views
Problem evaluating chewBBACA schema
schema chewbbaca
written by blur 30
0 votes
6 replies
2.8K views
bam is in a format that cannot be usefully indexed
mapping bam index star
written by Kelly 1
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